KEGG   Ictalurus punctatus (channel catfish): 108265475
Entry
108265475         CDS       T04658                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X2
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    108265475 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ipu03036]
    108265475 (kdm5c)
Enzymes [BR:ipu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     108265475 (kdm5c)
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108265475 (kdm5c)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108265475 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD Aida_N zf-PHD-like
Other DBs
NCBI-GeneID: 108265475
NCBI-ProteinID: XP_017323314
Ensembl: ENSIPUG00000011859
UniProt: A0A2D0QYC3
LinkDB
Position
5:6370050..6390989
AA seq 1577 aa
MAMEAGDEFIPPPECPVFEPSWEEFADPLGYIAKIRPIAEKSGICKIRPPPDWQPPFAVE
VDNFRFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKIPNIERRILDLFSLSKIV
TEEGGFETVSKERRWARVAQKLGYPPGKNIGSLLRSHYERIVYPFEMFHSGASLPPCKPR
PYESDDVDKEYKPHSIPLRQSVQPSKTSSYGRRANRLQPEGPEDPTLHPLTTGSQHSSSP
EPTEEDIEKNPELKKLQIYGAGPKMMGLGLVARDKARKKDELPQTVIVKDSSIKEEPGEM
LITKSEPDIPPPPPNLIVKDEVKKKEEDEGRAVDVKDPIKDEPCTKMTMRLRRNHSSSQF
VDSFVCRMCGRGDEDEKLLLCDGCDDNYHTFCLLPPLTDPPKGNWRCPKCVAEECKKPAE
AFGFEQATREYTLQSFGEMADTFKADYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYG
ADIHSKEFGSGFPVNNGKRHLTEEEEAYARSGWNLNVMPVLEQSVLCHINADISGMKVPW
LYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAEKLEEVMKKLTPELFEFQP
DLLHQLVTIMNPNILMGHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTAD
WLPLGRSCIEHYRVLRRYCVFSHEELTCKMAACPEKLDLNMAAATHREMFIIVQEERKLR
KALLEKGITEAEREAFELLPDDERQCDKCKTTCFLSALACTNCSESLVCLYHTQDLCSCP
TDKLYLRYRYTLDELLAMLYRLKVRAESFDSWANRVKEALEQEEGNKIDIKNLVALKEEA
AERKFPDNELLQRLTVVLDDMQRCQSRSTALINGNQGSKMSLEELRTLVDTMQNLPCVME
QLGEVQVVLQKVEEFESRAQAIVSSSAGEWKQSSAPSEEDVQALLEEGSALPAVAPACGL
LSGLQEQRRWLEQVRRTIGPGGGVVTLAVLRNLMEAGCNVLQSVSVETAMAELQELLTIA
ERWEEKAQICLEDRQKHPLSTLEAIVNEAQLIPVQLPNILALQACLSRARAWVTDLEEIQ
NGEHYPCLDDLEGLVAIGRDLPVRMEELRQLELQVASAHSWREKASKTFLKKNSQHSLLE
VLCPCVEKRKKREEDSLSSEADSDVDVLGLTAQDLRDPGAIVMAFKEGEQHEKEALLRMR
QLNLAKPGLENIPKEAQAMHIKQEQRLSESMDTDTPVSSENGSQQNGGSTHSHTVSQSVC
VCGGQPHPLFHRCHLCRDWFHGGCVPFPSVLGPTDVPLVNPLCWWDWDTRFLCPRCQRTR
RPRLEIILALLVALQKLPVRLPEGEALQCLTERAINWQGRAKQALDSPELQGALQRLQEL
KETQSREKDEQADEKKGNSEEVIVLSDSEEPEESVIDLTEESDMAKSNREKAANGVQSGC
ENGIKKPDVENVTGVESLVPLIPYLKGPVIELSTSTRAHLEELQLEGDLLEVTLDQTHTI
YRLLQAASKPPRQTLHTLIQIELQEQNRSGRGSRTKESKRKRKSQRSEGGAKSREASESK
KTRAVNHTPVQQQEEVL
NT seq 4734 nt   +upstreamnt  +downstreamnt
atggcaatggaggctggggatgagtttattccgcctccagagtgtcccgtgttcgagcct
tcgtgggaggagtttgccgatccactcgggtacattgccaagatccgtccaatcgcagag
aagtctggaatatgcaagattcgtcctccaccagactggcagccaccttttgctgtggag
gtggacaatttccgttttacaccccgtatccagagactaaatgaactagaggctgagacg
agagtgaagctgaattatctggaccgaatagccaaattctgggagatccaggggtcttca
ctcaaaatccccaacatagagcgacgcattctcgatctgttcagcttgtccaagattgtc
acagaagaagggggcttcgagacggtcagtaaggagaggcgatgggctcgagtagcccag
aagctcggctacccaccgggcaaaaatattggctccctgctgcggtcgcactacgagagg
atcgtctatccttttgagatgttccactctggtgctagcttaccgccatgtaagcccagg
ccatatgaaagtgacgacgtggataaggagtacaagccccactccatcccccttcgccag
tcggtgcagccttcaaagaccagcagttacggacgacgagccaaccgcctgcaacctgag
ggtccagaggatccgactctccaccctcttaccactggctctcaacacagctcctcgccg
gagcccaccgaggaggacatagagaagaacccagagctgaagaagctgcagatctatggc
gccggacccaaaatgatgggactcggcctggtggctcgagacaaggctaggaagaaagat
gaactcccccagactgtaatagttaaggacagcagtattaaagaagaacctggagagatg
ttaatcacaaagtcagaaccggacatccccccgccgcccccaaacctcatcgttaaagat
gaagtgaagaaaaaggaagaggatgagggccgtgcagtagacgtgaaggatcctattaaa
gatgaaccctgcaccaagatgaccatgaggctgagacgcaaccacagcagctcacagttt
gtggactcgtttgtgtgccgcatgtgtggccgtggggacgaggacgagaagctgctgcta
tgtgatggttgcgatgataattaccacactttctgtctcctgcctcccctcacagaccct
cccaagggcaactggcgctgtcccaaatgtgtagcagaggagtgcaagaaacctgcagaa
gcatttggttttgaacaggctacacgagaatacacgttacagagtttcggtgagatggcc
gacacgttcaaggccgattacttcaacatgcctgtccatatggtcccaacagagctggtt
gagaaggagttttggcgattggtcagtagtattgaagaggatgtgaccgtcgaatacggt
gcagacattcactccaaagagtttgggagcggtttccctgtcaacaatggcaagagacat
ttaaccgaagaagaggaggcatatgcacgcagtggctggaacctgaatgtgatgccagtg
ttggagcagtcagtgttgtgccatatcaatgccgacatctcaggcatgaaggtaccgtgg
ctgtatgtgggcatggttttttctgccttctgctggcacatcgaggaccactggagttac
tccatcaactacttacactggggggagcccaaaacatggtatggtgttccttcagtagca
gcagaaaagctggaggaagtgatgaagaagctcactcctgaactctttgagttccagcca
gatctgcttcatcaactcgtcacaatcatgaaccctaatatactcatgggccatggagtg
ccggttgtgcgtacgaatcagtgtgctggagagtttgtaatcactttccctcgagcctat
cacagtggcttcaatcagggatataattttgctgaagccgtcaacttctgcactgcagat
tggctgcccttagggcggtcatgcattgagcattacagagtcctcagacgctactgcgtg
ttctcgcatgaggagctcacctgcaaaatggccgcctgcccagagaagctggacctgaac
atggctgcagccacgcacagagaaatgttcattattgtccaagaggagaggaaactccgc
aaggccctgctggagaagggtataacggaggcagagcgggaggcatttgagttgttgcct
gacgatgagaggcagtgtgataagtgtaagactacctgcttcctgtctgccctggcttgc
accaactgctctgagagccttgtctgcctctaccacacacaagacctctgctcctgcccc
acagacaaactctacctcaggtatcgctacactctggatgagctattggccatgttgtat
cggttgaaggttcgggccgagtcctttgactcttgggctaacagagtgaaagaagcactt
gagcaggaggagggcaacaaaatagacattaaaaatctggtggcactgaaggaggaggcg
gcagaacgtaaatttccagacaacgagctgctccaacggctcacggttgtattggatgat
atgcagaggtgccagagcaggagcacagcgcttattaatggtaaccaaggcagtaagatg
agtctcgaggagctccggactctggtggacaccatgcaaaaccttccttgtgtaatggag
cagctgggggaggtgcaggttgtgctacagaaggtggaggagtttgagtcacgtgcccag
gccatagtgagcagcagtgctggtgagtggaaacagtcctccgctccctcagaagaggat
gtgcaggctctgttagaggaggggtctgcactgccggctgtagccccagcctgcgggctc
ctgtctggcctgcaggaacagagacgctggctagagcaggtgcgcaggacaattgggcct
gggggtggagtggtgactctggccgttctgagaaatttgatggaggccggctgcaacgtg
ttgcagagtgtcagcgtcgagaccgccatggcagagctgcaggagctgctgaccatcgca
gagcgttgggaagagaaggcccagatctgcctcgaagaccgacagaagcatcctctctcc
acattggaggccatagtgaatgaagcccagctgatccccgtgcagttgcccaacatcttg
gccctccaggcctgcctgagtcgagcccgtgcctgggtcacagacctagaggagatccag
aatggagagcactacccatgtctggatgacctggagggtctggtggcaattggccgtgac
cttcctgtgaggatggaggagctgcggcagctcgagctgcaggtggccagtgctcactcc
tggagggaaaaggccagcaagaccttcctgaagaagaacagtcagcacagcctgctggag
gtgttatgtccatgtgtggagaagaggaagaagagggaggaagactctctgagctcagaa
gcagactctgatgttgacgtgttggggctcactgctcaggacctccgagacccaggagcc
attgtaatggcattcaaggagggagaacagcatgagaaagaggctctgctgcgtatgcga
cagctgaacctggccaagcccggcctggagaacatacccaaggaggcacaggctatgcac
atcaaacaagagcagaggctgagtgagtcaatggatacagacacgcctgtgtcctcagaa
aacggctcacaacagaatggaggctccacccactcccacacagtcagccagtctgtgtgt
gtgtgcggtggccaaccccaccctctgttccaccgctgccatctgtgcagagactggttc
catggaggctgtgtgcccttcccttctgtactgggccctactgatgtgccacttgtaaac
ccactttgttggtgggactgggacacgcgcttcctgtgcccacggtgccagagaacacgg
cgtccacggctagaaatcattctagcgttgttagtggcgttacagaagctgcctgtgcga
ctgccagagggtgaggccctgcagtgtctcacagagagagcgattaactggcagggcaga
gccaaacaagccctggattctcctgagctgcaaggggcactgcagaggcttcaggaactg
aaagaaacacagagcagggagaaggacgagcaggcggatgaaaagaaagggaattcggag
gaggtgattgtgctgtcggactctgaggagccggaggagagcgtgatcgatctgactgag
gagagtgacatggcgaaaagcaacagagagaaagctgctaacggagtacagtctggctgt
gaaaatggcattaagaagccagatgttgaaaatgtaacaggggtggagtctctggtgcca
ttgattccgtatcttaaagggccagtcatcgaattatccacttcaaccagagctcattta
gaggagctacagctagaaggtgacctgctggaggttactcttgatcagacgcacaccatc
taccgacttctgcaagcagcatctaagccaccacgccagactctgcacacgcttatacag
atcgagttgcaggagcagaatcgctcaggtcgcggcagcaggacaaaggagtccaagagg
aagaggaaaagtcagagatctgaaggaggtgcaaagtccagagaggcctcagagtcaaag
aagacacgagctgttaaccacacgcctgtacagcaacaagaagaggttttgtga

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