KEGG   Ictalurus punctatus (channel catfish): 108265570
Entry
108265570         CDS       T04658                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108265570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108265570
Spliceosome [BR:ipu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108265570
 Complex B
    108265570
 Complex C
   U2 SnRNP specific factors
    108265570
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Ubiquitin_2 Rad60-SLD
Other DBs
NCBI-GeneID: 108265570
NCBI-ProteinID: XP_017323549
Ensembl: ENSIPUG00000002470
UniProt: A0A2D0QZ06
LinkDB
Position
5:complement(1303985..1312225)
AA seq 798 aa
MPPVQISQPEANNKADEQKEESPATKSIVGIIYPPPEVRNIVDKTASFVARNGPEFEARI
RQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQSLQQAQQQLPQ
KVQAQVIHETVVPKEPPPEFEFMADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLQKLKREAENPREVLDQVRYRVEWA
KYQERERRKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILI
QERYEKYGESEEVEMEVESEDEEDERENRNEGHATQLDQDTQLQDMDEGSDEDEDSMKAP
LPPENPMPPPLPPTPDQVIIRKDYDPKASKPQAVMPPGDEFLISPITGERIPASKMQEHM
RIGLLDPRWLEQRDRNLRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDENKDKIGPSK
PNETGLPPLPTSVPTMPKPSPPITTAPRMPPAKMLEVSGCVSWQVPPPLRTTLLSAMPVI
PRPPMAPVVRLTPGQVLTPMPPMVHAPRINVVQMPPTTPHIMAPRPPPMVVPAAFVPAPP
VPQPPSSAPAPMPPTHPPTPHDDEPVNKKMKTEDNLIQEDEFLRRNKGPVAVKVQVPNMQ
DKTEWKLNGQVLSFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNM
NNGSVIHLALKERGGRKK
NT seq 2397 nt   +upstreamnt  +downstreamnt
atgccgccggtgcagatttctcagcccgaggccaacaacaaggccgatgagcagaaggaa
gaatctccggccactaagtccatcgtggggatcatataccctcctcctgaagtgcgcaac
atcgtggacaagaccgccagcttcgtagcgaggaacgggcccgagtttgaagcgaggatt
cgtcagaacgagatcaacaaccccaagtttaacttcctgaaccccaatgacccataccat
gcctactaccgccacaaggtcaacgagttcaaagagggcaaaggtcaggagccatcggcc
gccgtgcctaaggtcatgcagcagcagtccttgcagcaggcgcagcagcagctcccgcag
aaggtccaggcgcaggtcatccatgagacggtcgtccccaaggagcctccgcccgagttc
gagttcatggccgacccgccctccatctcggccttcgacctggacgtggtaaagctgacg
gctcagttcgtggcgcgtaacggccgccagttcctcacgcagctcatgcagaaggagcag
aggaactaccagttcgacttcctgcgtcctcagcacagcctcttcaactacttcaccaaa
ctggtggagcagtacaccaagattctgatccccccgaaaggactgctgcagaaactgaag
cgggaggcggagaatccccgcgaggtcctggatcaggtgaggtacagagtggagtgggcc
aagtaccaggagcgagagaggaggaaagaggaggaggagcgagagaaagagcgtgtggcg
tacgctcagatcgactggcatgacttcgttgtcgtggagacggtcgatttccagcccaac
gagcaagggaacttccctccccccaccactcctgaggaactgggagctcgaatcctgatc
caggagcgctatgagaagtacggagagagtgaggaggtggagatggaggtggagagcgag
gacgaggaggacgagcgagagaacagaaacgaaggacacgcaactcagctggatcaggac
acgcagctgcaggacatggacgagggttcagatgaagatgaggattcgatgaaggctcca
cttcctcctgaaaaccctatgcctcctcctctgcctccaactccagaccaggtcatcatc
cgcaaagactacgaccccaaggcctctaagcctcaggctgtgatgcctcccggtgacgag
ttcctcatctccccgatcacgggtgagaggatcccggccagtaagatgcaggagcacatg
cgtatcgggctgctggacccgcgctggctggagcagcgagaccgcaacctcagagaacga
cagatcgaagaggaggtgtacgctcccggcctggacatcgagagcagcctgaagcagctg
gccgagagaagaacggatatcttcggtgtggaagaaaccgccatcgggaaaaagatcgga
gaggaggagatccagaaacccgaggagaaggtgacgtgggacggtcactcgggcagcatg
gcgcgtacgcagcaggccgctcaggccaacatcacgctgcaggagcagatcgaagccatc
cacaaagctaaaggcctagtgcaggaggacgagaacaaggacaagatcggacccagcaaa
cccaatgagaccgggttgccaccactgcccacctccgtgcccaccatgcccaagcccagc
ccacccatcaccaccgctcccagaatgccacctgcaaaaatgttggaagtcagtggatgt
gtgtcgtggcaggttcctcctcctctgcgcaccaccttgctttccgccatgcccgttatc
ccgaggccccccatggcccccgtggtgcgcttgacccccggtcaggttctgaccccaatg
cctcccatggtgcacgctcctcgcatcaacgtggtgcagatgcccccgaccacaccccac
atcatggctcctcgacctccacccatggtggtgcctgcagcgttcgtacctgcccctcca
gtgccccagccacccagttctgcccccgcccccatgccgcccacccaccctcctacccca
cacgatgacgagccggtgaacaagaagatgaagactgaggacaacctgatccaggaggac
gagttcctgcgcagaaacaagggtcccgtggcggtcaaggttcaggttcccaacatgcag
gacaagaccgaatggaagctgaacggacaagtgctgagcttcaccctgcctctcacagac
caggtgtctgtgataaaggttaagatccacgaagccaccgggatgccggccggcaaacag
aaacttcagtacgagggaatcttcattaaggactccaactctctggcgtattacaacatg
aacaacggatctgttattcatctggcactgaaggagagaggagggaggaagaagtag

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