Ictalurus punctatus (channel catfish): 108265622
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Entry
108265622 CDS
T04658
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108265622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108265622
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108265622
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108265622
Complex C
U5 SnRNP specific factors
108265622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
T2SSE
SWI2_SNF2
Sigma54_activ_2
DUF603
DrmE_N
Motif
Other DBs
NCBI-GeneID:
108265622
NCBI-ProteinID:
XP_053536212
UniProt:
A0A9F7R9Y7
LinkDB
All DBs
Position
5:complement(13957512..14078271)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDPRYHVLVNLGKKIT
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEGSDDSEGEEADVGCTLS
ANLGSAGDVMTNKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTATDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSDSEKERIMNKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDSDLESMDIDHGQTMSARRLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSEDETLVAIEKMPKYSQAAFEGFKTLN
RIQSKLFKTTMETDGNLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINIDDFKIIYVA
PMRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLYYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYSF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMLGKLPDMLN
AEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDERNTDPLLEMRRMDLVHTAST
VLEKSNLIKYDKRTGSFQVTDLGRIASHFYITHDSIMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKSFPFERLYDLNHNEVGELIRMPKIGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVTSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFECLYQ
NMFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPM
ESLAEQVFVDWHQKFQGLLNKKVVILTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHTIMKHSPSKPSLVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCSEKDLAPILEKLSDGALKETLSNGVGYLHE
GLSIMERRTVEQLFNSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGCCVIMCQGSKKDFFKKFLYEPLPVESHLDHRLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLLEIISNAAEYKNIPIRH
HEDTLLHQLAQKVPHKLSNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFTTEHIKRSTEKGVESI
FDIMEMEDEDRINLLQLSDIQMADVARFCNRYPNIELSYEVADKDDIKSGSPVVVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDKDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttacagcgcgtagcttgcagtatgaatataaagcgaactcaaacttagtg
ttgcaagcggaccgctctctgatcgaccgcacacggcgagatgaaccaaccggcgaggtc
ttgtcactggttggaaaattggagggaacaaaaatgggcgataagagtcagagaacaaaa
ccacaaatgttggaggaaaggagggctaagagaagaaagcgggatgaggacaggcatgac
attaataaaatgaaagggttcactctcctgtctgagggcattgatgacatggtgggtatt
gtttataagcccaagacgaaagagaccagagaaacttatgaaatcctcctgagcttcatc
caggctgcacttggagatcagccaagagacatcctgtgtggggctgctgatgaagtcttg
gctgtattaaagaacgacaagatgagagataaggaaaggcggagagaggttgagcagctg
cttggccctgctgatgacccacgttaccatgtcctagtcaaccttggcaaaaagatcaca
gactatggaggagacaaggagctccaaaatatggatgacaacatagatgaaacgtatgga
gtaaatgtgcaatttgaatctgatgaggaggaaggtgacgaagaccagtttggagaagta
cgtgatgaaggctctgatgacagtgaaggtgaagaagcagatgtgggatgtacgctgtct
gctaatcttggaagcgcaggagatgtgatgacgaataaaaagaaagaccttcatccaaga
gatatcgatgctttttggcttcagcgacagctcagtcgtttctatgacgatgctattgtg
tctcagaagaaagctgatgaggttctggagattctcaagactgccactgatgaccgagaa
tgtgaaaatcagttggtacttttgctgggttttaacacctttgacttcatcaaggtccta
cgccagcatagacgaatgatcctttactgcaccatgttggcaagtgctcagagtgactca
gagaaggagaggattatgaacaaaatggaagcggaccaggatttgtctaaagttctttac
cagttgcaggagactgaaaaagaagacatcattcgagaggagagatcacgacgagaaagg
gttagaaagtctcgagtagacagtgatctggagtcaatggacattgatcatggacagaca
atgtcggctcggcgtctcctagatctagaggaccttgcctttacccaggggagtcacttt
atggccaataagcgctgtcagctgcccgatggttccttccgcaaacagaggaaaggttat
gaggaggttcatgtacctgcacttaaacccaagcccttctctgaggatgagactcttgtg
gctattgagaagatgccaaagtactcccaagcagcatttgaggggttcaaaaccttgaac
cgcatccaaagtaagctgttcaagaccaccatggagacggatgggaacctgttggtgtgc
gctcccactggagctggtaaaactaatgttgcactgatggccatgctcagagaaatcggc
aagcacatcaacatggatggcaccatcaacatagatgacttcaaaattatttatgtcgct
cccatgcgttcactggtacaggaaatggttggcagctttggaaagcgtttggctagttat
ggcatcacagtgtcagagttgactggagatcaccagctctgtaaagaggaaatcaatgct
actcagatcattgtgtgcacacctgagaagtgggatatcatcacccgcaagggaggggaa
cgcacatacacccagctagtgcgcctcatcatcattgatgaaatccacttgcttcatgat
gaccgtgggccagtgctggagtctctgattgctcggactatccgaaatgtggaactgact
caggaggatgtgcgcctcattgggctcagtgccacactgccaaattatgaggatgtggcc
acatgccttcgtgtagaccctgctaagggtctttactactttgataacagtttccgtcct
gtgcctctagaacaaacatacgtaggaatcacagagaagaaggcaatcaagcgctttcag
atcatgaatgagattgtctatgagaagatcatggaacatgcaggaaaaaatcaggtcttg
gtatttgtccattcacgcaaggagacggggaagactgcacgagcaatcagggacatgtgt
ttggagaaagacacgttgggacttttcctccgggaaggttctgcctccaccgaggtccta
agaactgaggcagagcaatgcaagaatctggagctaaaggacctgttgccatatagcttt
gccatccatcatgctggcatgactagagtggacagaacattggttgaggatctttttgct
gatagacatatacaggtcctggtgtcaactgctacattggcctggggagttaatttgcca
gcacacactgtcatcatcaaaggcacacaggtgtacagtccagagaaaggcaggtggacg
gagctaggggctctggacattttgcagatgctggggcgtgcaggccgcccacagtacgac
tctaaaggagagggcattctgatcacatcccatggagagctgcagtattacctgtctctg
ctcaaccagcagttgcctattgagagtcaaatgttaggcaaactccctgacatgctcaat
gctgagattgtgctgggcaatgtccagaatgctaaggatgcagtgaactggctgggttac
acttatctgtatgtgcggatgctgcgtaacccaacactctacggagtttcccatgatgag
cgcaacactgatcccctgctggagatgcgtaggatggaccttgtgcacactgcctccact
gtactagagaaaagcaacctgatcaaatatgataagaggactgggagcttccaggtgaca
gacctgggccgcattgccagtcacttctacatcacacatgattccataatgacttataat
cagctgctaaagcctacactcagtgaaatcgagctcttcagggtattctccctctcctct
gaattcaggaacatcacagtgagagaggaggaaaaacttgagcttcagaagcttctggaa
agggtgccgattccagtgaaagaaagtattgaggagcccagtgctaagataaatgttctg
cttcaggcctacatctcccaactcaaactagagggctttgctctaatggctgacatggtc
tatgttacccagagtgcaggtcggctgatgagggccatctttgagattgttctgagcaga
ggttgggcacagctcacagacaagaccatgaacctttgcaagatgatcgacaaaaggatg
tggcagtctatgtctcctctgcgacagttccgcaagcttcctgaggaagttatcaagaaa
attgagaaaaaaagttttccatttgaacgactgtatgacctaaaccacaatgaagttggt
gaattgattcgtatgcccaagatagggaaaaccatacacaagtatgtgcatcagttcccc
aaactggacttggcagtgcatctgcagcccatcacccgctccacactgaaagtggagctc
acaatcacaccagactttcaatgggatgaaaagatacatgggtcatcagaggcattctgg
atcttggtggaagacgttgacagtgaagtgatcctacaccatgaatatttcctgctcaag
gccaagtatgctcaggacgagcacctggtcaccttttttgtgcctgtgtttgagccgctg
cctccacagtacttcatcagagtcacttcagatcgttggctatcatgtgagacccagctg
ccagtgtcatttcgccacctgatcttgccagaaaagtatccacctccaacagagctgcta
gacctacaacctcttcctgtatctgctctcagaaatgctgcctttgagtgcctctaccaa
aacatgtttcctttcttcaaccctattcagacccaagtgtttaatgctgtttacaacagt
gatgataacgtgtttgttggagcccccactgggagtgggaagaccatctgtgcagagttt
gctattctcaggatgctgctgcacaactcagaaggccgctgcgtctacatcacacccatg
gagtctctagctgaacaagtatttgtggattggcaccagaagtttcaaggccttctgaat
aagaaggtagtcatactcactggagagaccagcactgacctcaagctactgggaaaaggt
gacatcatcatcagcaccccagataagtgggatattttgtcccgccgatggaaacagagg
aagaatgtccagaatgtcagtctcttcattgtggatgagactcatctcattggtggagag
aatgggcctgtcctagaagtaatctgctcaagaatgaggtacatctcctctcagattgag
cgtcccatccgcattgtggcactaagctcatctctgtcaaacgctaaagatgtggcccac
tggttgggttgtagcaccactgcaacgttcaacttccacccaaatgtcaggcctgtgcca
ctggagcttcacattcagggtttcaacgtgagtcacacacaaacccggcttctgtctatg
gctaaacctgtgtaccataccatcatgaagcattctccatccaagccatctttggtgttc
gtaccttctcggagacagactcgcctcactgccattgacatattaactttctgtgctgct
gatgtggttccacaaaggttcctacactgctctgagaaagacttggctccaatcctggag
aagctgtctgatggtgcactgaaagagaccctctctaatggtgtgggttatctgcatgaa
ggactctcaattatggaacgcaggacagttgaacagctctttaactctggtgccattcag
gttgtggtggcctctcgttctctttgctggggaaccaacatctctgcccacttggtcatc
gtcatggacacacagtattacaacgggaaaattcatgcttatgtagattacccaatctat
gatgtgctgcaaatggtggggaaggccaatcgtcccctacaggatgatgagggctgctgt
gtcattatgtgccagggctctaaaaaggacttcttcaagaagttcctttatgagcctttg
ccagttgaatctcatttggaccaccgtcttcatgaccacttcaatgctgagatagtcacc
aagacggtggaaaacaagcaggatgctgtggactatctaacgtggaccttcctttaccgc
cgaatgacccagaaccccaactactataatcttcagggtatgtctcatcgtcatctgtca
gaccacctgtcggaattggtggagaacacactgcaggatctggagcagtccaagtgcatc
agcattgaggatgagatggatgttgcccctctcaatctgggcatgattgcagcatactac
tacattaactatactaccattgaattattcagcatgtctctgaatgccaagactaaaatc
cgtggtctgcttgagatcatctccaatgccgctgagtacaagaacataccaatcagacat
catgaagacaccctgctccatcagctagcccagaaggtgcctcacaaactgagcaacccc
aagtttaatgacccccacgtgaagaccaacctgctgttacaggcccatttgtcccgtatg
cagctgagtgcagagcttcagtctgacactgaagagatcctcagcaaggcagtacgtctc
atccaggcatgtgtagatgtactttccagcaatggctggctgagtccggcattggctgct
atggagcttgctcagatggtgacacaggccatgtggtctaaggactcgtatctaagacag
ctgccacacttcacaacagagcatatcaaacgcagtacagaaaagggtgtggagagcatt
tttgacatcatggagatggaggatgaggaccgcattaatcttctacagctgtcagatatt
cagatggccgatgtggcacgtttctgtaaccgctaccctaacattgagctctcctatgaa
gtggctgacaaagatgacatcaagagcggcagtccagttgttgttcaggtgcagttagag
agagaggaagaggttacaggaccagtcattgcaccactgtttccacagaaacgtgaagag
ggctggtgggttgtgattggagaccccaaatctaacagccttatctccatcaagaggttg
actctgcaacaaaaagccaaggtgaaactggactttgtagccccagttgttggagtccat
aactatacactgtatttcatgagtgatgcttacatgggttgtgaccaggagtacaagttc
agtgtggatgtgaaggaggcagacagtgacaaagacagcgactcagactga
DBGET
integrated database retrieval system
