Ictalurus punctatus (channel catfish): 108265642
Help
Entry
108265642 CDS
T04658
Name
(RefSeq) transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108265642
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108265642
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108265642
03036 Chromosome and associated proteins [BR:
ipu03036
]
108265642
Peptidases and inhibitors [BR:
ipu01002
]
Metallo peptidases
Family M1
108265642
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108265642
Coactivators
SAGA/TFTC/STAGA complex
108265642
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108265642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_TAF2_C
TAF2_3rd
HEAT_2
HEAT_spiro
Peptidase_M1
Peptidase_M1_N
SR-25
CCDC106
Motif
Other DBs
NCBI-GeneID:
108265642
NCBI-ProteinID:
XP_017323688
Ensembl:
ENSIPUG00000001047
UniProt:
A0A2D0QZ60
LinkDB
All DBs
Position
1:4867035..4882745
Genome browser
AA seq
1196 aa
AA seq
DB search
MNRKKDKGFESPRPYKLTHQVVCINNINFQRKSVIGYVELTIFPSVVNLNRIKLNSKQCR
IYRVRVNELEAPFLYNDPTLEVCHHESKQRNLNYFSSAYAAAVSAVDPDAGNGELSIKVP
AELWKQGDEMKVLKVYIEFSLDQPKGGLHFVVPDTEGSMAERGAHVFSCGYQNSTRFWFP
CVDSYSELCTWKLEFTVDASMVAVSCGDLMETVYTHDMRKKTFHYVLPIPTAAPNISLAV
GPFEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEVFEFYEEILTCRYPYSCFKTVFVDE
AYTQVSSYASMSIFSTNLLHSGMIIDQTPVTRRCLAQGLAQQFFGCFISRMSWSDEWVLK
GISGYIYGLYLKKTFGVNEYRHWIREELDRIVEYELKTGGVLLHPTFAVGKEKDGPTPHL
HFSIKHPHTLSWEYYRMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKYQSH
MWSQMLLSTSWFLKSISNVSGKDIGPLIKQWVDQSGVVKFFGSFAFNRKRNVLELEIRQD
YMSSGTQKYVGPIKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEE
VDMDLSAMDADSPLLWIRIDPDMAVLRKVELAQADFMWQYQLRYERDVVAQEEAIVALEK
FPTAASRLALTDILEHEQCFYKVRMQACFCLAKIANSMVSTWQGPPAMKSLFTRMFCCKS
CPNIVKTNNFINFQSYFLQKTMPVAMALLRDVQNLCPKEVLNFILDLIKYNDNGKNKFSD
NYYRADLIEALTNSLTPAISINNEVRTVDSLNADVKLILEEVTRFLNMEKLLPSYRNAIT
VSCLRAIRMLQKNGHIPSDPSLFKAYAEYGHFVDVRVAALEAVVDYTRVDRSAEEFQWLL
DMVQNDPVHYVRHKILSMLSRNPPFTKAAESPLCTEALVDQLWKLMNSGTCHDWRLRCDA
VNLYHTLFGLTRPSCLPLPELGLVLNLKEKKAVLNPTIKSDQEGPDLTPEIIFVGSVKEE
HVVMEPVLGGIALTPQGLKRKAETPLASPPEPGQVLQDEPPGKIVAKGRFPMQEDEDIDM
DTVHDSRAFIYHHLNILDRPSTPGREPPVVEQVVMPMPSTPVQTFAKEAASSSSSSKHHH
HHHHHHHEHKKKKKKHKHKHKHKHKHESKDKDKEKERDIHSFGNSPASGRSLSLSD
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcaagaaggacaagggcttcgagagtccgcgaccttataaattaacccaccag
gtggtgtgcataaacaacatcaacttccagaggaagtcagtcattggctatgtggagttg
accatcttccccagcgtggtgaacctgaaccgcatcaagctgaacagcaagcagtgccgc
atctacagggtgcgcgtgaacgagctggaagcgccgttcctttacaacgaccccacgctg
gaggtctgccaccacgagtccaagcagcggaatctgaactatttctccagtgcctatgct
gcagcagtgagcgctgtggatcctgatgctggaaatggagagctctctattaaagtgccc
gctgagctgtggaagcagggagacgagatgaaggtgctgaaggtgtacatcgagttctcg
ctggaccagccgaagggcgggctgcacttcgttgtgcctgacacggagggcagcatggcc
gagaggggagctcacgtcttctcctgcggataccagaattccacacggttctggttcccc
tgcgtggactcgtactcggagctgtgcacgtggaagctggagttcaccgtggacgcctcc
atggtggccgtgtcgtgtggtgacctcatggagactgtctacactcacgacatgcgcaag
aagacttttcattacgtgctgcccatcccgaccgccgcgcccaacatctcgctggcagtg
gggccgttcgagatcctcgtggacccctacatgcatgaggtgactcatttctgcctgcct
cagctgctgccgctgcttaaacacaccatgtcctacctacacgaggtgttcgagttctat
gaggaaatcctgacctgccgttacccgtactcctgcttcaagaccgtgtttgtggacgag
gcctacacgcaggtctcctcctatgcctccatgagcattttcagtacaaacctgctgcac
agcggaatgattatagaccagacgccagtaacgcgccgctgtctggcacagggcctggcg
caacagttcttcggctgcttcatctcacgcatgtcatggtctgatgaatgggtgttgaag
ggcatctcgggctacatctacggcctgtacctgaagaagacgttcggcgtcaacgagtat
cgccactggatcagggaggaactggacaggattgtggaatatgagctgaaaacaggaggc
gtcctgctgcaccccacgttcgccgtaggaaaagaaaaagacggccctactccgcacttg
catttctccatcaaacacccgcacacgctgtcctgggagtactacagaatgttccagtgc
aaggcacacctggtcatgaggctgatcgagaaccggatcagtatggagttcatgctgcag
gtgttcaacaagttgttaagcctggccagcacggcgtcgtcgcagaagtaccagtcgcac
atgtggagccagatgcttctgtccacgtcttggtttctcaagtccatttccaacgtgtcc
gggaaggacattgggcccttgatcaagcagtgggtagaccagagtggggtggttaagttc
tttgggagctttgccttcaacaggaaaaggaacgtgctggagctggagatccgtcaggat
tacatgtcctccggcactcagaaatacgtgggccccatcaaagtgactgtccaggagctg
gacggatccttcaaccacacgctgcagattgaagagaacagcctcaagcatgacatcccc
tgtcattccaaaagcaggaggaacaagaagaagaaaatccctctgatgaatggagaagag
gtggacatggacctgtctgcgatggatgcggactcgccgctgctgtggatccggatcgac
cccgacatggcagtgctaaggaaggtggagctggcgcaggccgacttcatgtggcagtac
cagctgcgctacgagcgagacgtggtggcacaggaggaggcgattgtggcgctggagaaa
ttccccacggccgcctctcgcctcgccctcaccgacatcctcgagcacgagcagtgcttc
tacaaagtgcgcatgcaggcatgcttctgcctggccaagattgccaactccatggtgagc
acctggcaaggccctccagccatgaagtccctcttcacgcgcatgttctgctgcaagagc
tgccccaacattgtcaagaccaacaacttcattaacttccagagctacttcctgcagaag
accatgccggtggctatggctttgctcagggacgtgcagaatctctgtcccaaggaggtg
ctcaacttcattctggacctcatcaagtacaacgataacgggaagaataagttttcagat
aattactaccgcgccgacctgatcgaagccctgaccaactccttaacgccggccatcagc
atcaataacgaggtgcgcacggtggacagtctgaacgccgacgtcaagctcatcctggag
gaagtgacgcgcttcctcaacatggagaaactgctgcctagctaccggaacgccatcacc
gtcagctgcctacgggccatcaggatgctgcagaagaacggacacatccccagcgacccg
agcctgtttaaagcctacgcggagtacggccattttgtggacgtgagagttgctgcgctc
gaggctgtggtcgactatacgagagtcgacaggagcgccgaggagtttcagtggctgttg
gacatggtccagaacgatcccgtgcactacgtcagacacaagattctcagcatgctgtcg
aggaatccccccttcaccaaagccgcggagtctcctctgtgcaccgaggctctcgtggac
caactgtggaaactgatgaactctggtacctgccatgactggcgtttgcgctgtgacgct
gtaaacctgtaccacacgctgtttggtctgaccaggccctcgtgtctgccgctgccagaa
ctcggcctcgtcctcaacctgaaggagaagaaggccgtcctgaaccccaccatcaaatca
gatcaggaaggtcctgacctcacacccgagataatcttcgtcggcagtgttaaggaggag
catgtcgtcatggagccggttttgggcggcatagccctcaccccacagggcctgaagagg
aaggcggagactcctttggcttcgccccccgaacctgggcaggtgctgcaggacgagccg
ccaggaaaaatagtcgccaagggccggtttccaatgcaagaggacgaggatatcgacatg
gacacggttcacgacagccgagcgttcatctaccaccacctgaacatcctggataggccg
tcaacaccaggtcgagagcctcctgtcgtggagcaggtcgttatgcccatgccatccacg
cctgtccagaccttcgctaaggaggccgcgtcgtcctcttcctcctccaagcaccaccac
catcaccaccaccaccaccatgagcacaagaaaaagaagaagaagcacaaacacaagcac
aagcacaaacacaagcatgaaagcaaggacaaggacaaagaaaaggagcgcgacatccac
agcttcggtaacagccctgcgagcggccgctcgctctcgctgtccgactga
DBGET
integrated database retrieval system
