Ictalurus punctatus (channel catfish): 108265655
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Entry
108265655 CDS
T04658
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108265655 (col2a1a)
04518 Integrin signaling
108265655 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108265655 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108265655 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108265655 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
108265655
NCBI-ProteinID:
XP_017323707
Ensembl:
ENSIPUG00000002310
UniProt:
W5UFG9
A0A2D0QZ89
LinkDB
All DBs
Position
5:complement(23290903..23317196)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFKIVDSRTVLLLVATQCILLALVRCQREDDQEELGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELRDCNNPIIPPGECCPICPADQDQTSETFGAKGQKGEPGDIANVL
GPRGPAGPMGPPGEQGPRGDRGPKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNPPGLGG
NFAAQMAGGFDEKAGAVNLGVMQGPMGPMGPRGPPGPSGAPGVQGFPGSPGEAGEPGPSG
PMGPRGPPGPPGKSGSDGENGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHPGLDG
TKGETGAAGAKGESGSPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGAPGSKGEAGPTGARGAEGAQGSRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGESGPKGERGVAG
PQGAPGPIGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLSGAKGAPGDRGVPG
LSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEPGKPGEKGLVGSSGPRGLSGKDGETGAAGPPGPAGPAGERGEQG
QPGPPGFQGLPGPSGPPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAIGALGPPGLQGMPGERGIAGIAGPKGDRGDSGEKGPEG
APGKDGTRGLTGPIGPPGPSGPNGAKGETGAIGPTGAAGARGAPGDRGEVGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGSPGVTG
FPGAAGRVGPPGPNGNPGPAGPVGPAGKDGPKGVRGDAGPPGRPGDAGLRGPPGLPGEKG
EAGEDGPPGPDGPTGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAHGIAGERG
PPGPVGPPGISGPSGEPGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGSPG
PVGPVGKQGDRGENGPQGPSGPPGPAGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTG
LQGLPGPPGAPGDQGAAGPAGPSGAKGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGESG
PAGPPGNTGPPGPPGPPGPGIDMAAFAGLGQPEKGPDPMRYMRADEASNNLRQHDVEVDA
TLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPDWKSGDYWVDPNLGCTADAIKVFCNM
ETGETCVKPTTSSIPRKNWWSAKSKGQKHVWFGENMGGGFHFSYGEKIPTPNVASIQMNF
LRLLSSEASQSITYHCKNSVAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYGVLEDG
CKKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGANQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaattgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
ctagcccttgtcagatgtcaacgggaagatgaccaggaggagttaggcggctgcatccaa
gatggccagcatttcgaggaccgtgcagtgtggaaacctgaagcgtgtcgggtctgtgtg
tgtgactcggggtcagtgctgtgtgatgaggtcatctgcgaggagctgagggattgcaac
aatcccatcattccacccggagagtgctgccccatctgccctgctgaccaagaccagact
agcgagacctttggtgcaaagggacaaaaaggagaacctggcgatattgcaaatgttcta
ggaccaagaggaccggctggccccatgggaccacctggagagcagggaccacgtggagac
agaggccctaagggtgagaagggaagtccaggccccagaggaagagatggcgagcccggc
acaccaggcaaccctggacctcccggaccaccaggcccaaacccacctggacttggagga
aactttgcggctcagatggctggaggttttgatgagaaagcaggagcagttaacttgggt
gtgatgcaaggcccaatgggccccatgggtccccgtggtcctcctggcccctctggagca
cctggcgtacaagggttcccaggcagcccgggagaagctggtgaacccggaccttctggc
cctatgggacctcgcggtccacctggaccacctggaaaatctggaagtgatggtgagaat
ggtaaacctggcaagcctggtgaccgtggacccactggaccgcagggagctcgtggattc
cctggaacccctggacttcctggcatcaaaggacacagaggacacccaggtcttgatggc
accaagggagagactggagctgctggagctaagggagagtcaggttcacctggtgagaat
ggcgcccctggaccaatgggccctcgtggtcttcctggtgagagaggacgccctggacct
tctggagccgctggtgcccgtggtaatgatggtcttcctgggcctgctggtcctcctggt
cctgttggtcctgctggtgccccaggtttcccaggagcccctggttccaagggtgaggcc
ggacctactggtgctcgtggagctgagggagcccaaggatcccggggagaggctggcact
ccaggttctcctggacctgctggagcctctggtaaccctggtactgatggtattcctgga
gccaaaggatctgctggtgcccctggtattgctggtgccccaggtttcccaggacctcgt
ggcccacctggacctcagggagctaccggacctcttggacccaagggtcaaagtggagac
cctggtatcccaggatttaagggagaatctggaccaaaaggagagaggggtgttgcaggg
cctcagggagccccaggcccaattggtgaggaaggtaaaagaggacctagaggagagccc
ggttctgctggccctcttggacctccaggagagagaggagctccaggtaaccgtggattc
cctggtcaagatggtctttctggtgctaagggtgctcctggcgatcgtggtgttcctgga
ctgtctggaccaaaaggtgctggtggagatcctggtcgtcctggcgagcctggtcttcct
ggagcaagaggtctcactggtcgtcctggagatgctggaccccaaggaaaagttggccca
agtggtgctcctggtgaggatggtcgtcctggtccccctgggcctcagggagctcgtgga
cagcctggtgtgatgggattcccaggacccaagggaggcaatggtgagcctggaaaacct
ggagagaaaggacttgttggcagctctggtcccagaggtttgtctggtaaagatggtgag
actggagccgctggccctcctggccctgctggacctgctggagagagaggtgaacaagga
cagcctggtcctcctggcttccagggtctacctggaccttctggacccccaggagagggt
ggcaaaccaggtgaccagggtgttcctggagagggtggtgcccctggtgcggttggacca
agaggtgagcgtggtttccctggtgagagaggaggtgctggaccccagggtcttcaggga
cccagaggacttcctggaacacctggaactgatggacccaagggtgcgataggcccggct
ggtgctattggtgccctaggtccacctggtctgcagggtatgcctggtgaaagaggtatt
gctggtatcgctggtcctaagggtgacagaggtgactctggagagaaaggacctgaggga
gctcctggcaaagatggtacaagaggtttgactggccctattggtccacctggtccttct
ggtcccaatggagcgaagggtgaaactggtgctattggcccaactggagctgctggagct
cgtggtgctcctggtgaccgtggtgaggttggacctcctggccctgctggttttgctgga
ccccctggttctgatggccagcccggaattaaaggagagcagggagagtcaggccagaaa
ggagatgctggatctcctggacctcaaggaccctctggagcacccggtccagttggccca
actggtgtctctggacctaaaggagcccgtggagcacagggatccccaggtgttactggt
ttcccaggtgctgctggaagagttggaccacccggtcctaatggaaaccctggccctgct
ggtcctgttggtcctgctggtaaagatggtcctaaaggagtgcgtggtgatgctggtccc
ccaggaagaccaggagatgctggactgcgtggacctcctggactccctggagagaaggga
gaggctggagaggacggcccccctggtcctgatggtcctactggtccttcaggtttagct
ggtcagcgtggtattgttggtctgcctggtcagcgtggtgaaagaggtttccctggcctt
ccaggaccttctggtgagcctggcaaacagggtgctcatggtattgctggtgaacgtggc
ccccctggccctgtaggaccccctggaataagtggaccttctggagaacctgggcgtgag
ggtaatcctggatctgatggtcctcctggcagagatggtgcccctggtgtgaagggtgaa
cgtggtaacactggtcctattggtgctcctggtgctccgggtgcccctggttctcctggt
cctgttggacctgtaggcaaacagggagacagaggagaaaatggaccacaaggaccttct
ggacctcctgggcctgctggagcaagaggcatggctggaccccaaggtcctcgtggagac
aagggagagtctggtgaggctggagaaagaggacagaagggacacagaggattcactggt
ctgcaaggtcttcctggacctcctggtgctcctggcgaccagggtgctgctggtcctgcc
ggacctagtggagctaagggaccccctggacctgttggtccatctggaaaggatggtgca
aatggtatccctggacccattggaccccctggacctcgtggacgctctggagaatctggc
ccagctggtcctcctggtaacactggaccccctggtcctcctggtcctccaggccctggc
attgatatggctgcctttgctgggctgggtcagccagagaagggtcccgatcccatgcgt
tacatgcgtgctgacgaggcctccaacaatctgagacagcatgatgtggaggttgatgcc
accctgaaatccattaacagccagattgaggatatccgcagccccgatggatctcgcaag
aaccctgctcgctcctgccgtgacctgaaactctgccaccctgattggaagagcggtgac
tactgggtggatcctaaccttggctgcactgctgatgccatcaaggtcttctgcaacatg
gagactggagaaacatgtgtgaagccaactacaagcagcatcccacgcaagaactggtgg
agtgccaagagcaagggtcagaagcacgtatggttcggcgagaacatgggcggtggcttc
catttcagctatggtgagaagatcccgactccaaatgtggccagcattcagatgaacttc
ctaagactgctatctagcgaggcatctcagagtatcacctaccactgcaagaacagtgtg
gcctacatggatgaggccaccggcaacctgaagaaggctcttctgctgcagggctccaac
gatgtagaaatcagagcagagggtaacagccgattcacatacggtgtgctagaggatggc
tgcaagaaacacaccggccaatggggtaagactgtgattgagtacaaaactcagaagaca
tctagactgcccatcgtggacattgctcctttggacatcggtggagctaatcaggagttt
ggagtggacattggaccagtctgtttcttgtaa
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