Ictalurus punctatus (channel catfish): 108265754
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Entry
108265754 CDS
T04658
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108265754 (rbm39b)
Spliceosome [BR:
ipu03041
]
Common components
Common spliceosomal components
General mRNP proteins
108265754 (rbm39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
108265754
NCBI-ProteinID:
XP_017323902
Ensembl:
ENSIPUG00000012202
UniProt:
A0A2D0QZT5
LinkDB
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Position
5:complement(6464204..6472876)
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AA seq
496 aa
AA seq
DB search
MADDFDIEAMLEAPYRKGDSKSYSANGYEEHSRKKRHSRSRSPSAERRRSRSRERKKGRD
KRKSRSREKKRSRSREQHPSRSHERHGRYRGHKSPHRKRSRSKSPFKKEKSPIRKPIDNL
SAEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEAT
SVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAALNLQKGNAGPMRLYVGSLHFNITE
EMLRGIFEPFGRIESIQLIMDSETGRSKGYGFISFADAECAKRALEQLNGFELAGRPMKV
GHVTERSDGSSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAKHALQMSG
SIPFGNLPGVISAPSMNQAMNLPTQPLATHCLQLSNMFSPQGENEPGWDIEIQDDVIEEC
NKHGGVVHIYVDKNSTQGNVYVKCPSIPAAMAAVSALHGRWFAGKMITAAYVPLPTYHNL
FPDSVTAIQLLRPTRR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgactttgatatcgaggcgatgcttgaagcgccttacaggaagggtgacagc
aagtcctatagtgcaaatggctatgaggagcacagcaggaagaaaaggcacagtcggagt
cgaagcccgagtgccgaacgccgcaggagtaggagcagagagcgcaagaagggcagagac
aagcgtaagagccgcagccgggagaagaagcgatcacgtagcagagagcagcacccttct
cgaagtcatgaaaggcatggacgttatagaggtcacaaaagcccccaccgcaaacgctct
cgaagcaagagcccatttaagaaagagaagagtccaataaggaaacctattgataatctg
agtgcggaggagagagatgcccgcacagtattctgcatgcagctggctgccagaatcaga
cccagagacctggaggaattcttctctgctgtgggcaaagtgcgtgatgtgaggatgatt
tcggacagaaactctcgcagatctaagggtattgcatatattgagtttgtggaggccacc
tccgtgcccctggctattggactgacggggcagaggttgctgggagtgccgatcattgtt
caggcctcgcaggctgaaaaaaacagagcagcggcggcggcagcagcccttaacttgcag
aaaggcaacgcggggccaatgcggctctatgtgggttccctgcacttcaacatcaccgag
gaaatgctcagaggcatattcgagccatttgggaggattgaaagcatccagttgatcatg
gacagcgagacgggcaggtcaaaaggttatggctttatatcgtttgcagatgctgaatgt
gccaagagggccctagagcagctgaacggttttgagctggctggccggcccatgaaggtg
ggtcatgtgacggagcgctcagatggctcatcagccagctctttcttggacaacgatgag
ctggagagaacaggcatcgacttgggcaccacgggccgcttgcagctgatggcccgactt
gcagaaggtacagggctgcagattcctccagccgcaaagcacgctctgcagatgagcggc
tctatcccgtttggtaaccttcctggagtgatctctgcaccaagcatgaaccaggccatg
aacctccccacccaacccctggcaactcactgcctacagctttccaacatgttcagccca
cagggagaaaacgagcctggctgggatatagagattcaggatgatgtcattgaagagtgc
aataaacatggaggcgttgttcatatatatgtagacaagaactccactcaaggtaacgtg
tacgtgaagtgtccgtctattccggccgccatggctgctgtcagtgccctacatggacgc
tggttcgcaggcaaaatgatcaccgctgcctatgtacccctcccaacctaccacaacctg
tttcctgactcagtcacagccatacagctgctgagacccacacgccggtga
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