Ictalurus punctatus (channel catfish): 108265870
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Entry
108265870 CDS
T04658
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108265870
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108265870
04131 Membrane trafficking [BR:
ipu04131
]
108265870
03036 Chromosome and associated proteins [BR:
ipu03036
]
108265870
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108265870
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108265870
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108265870
Membrane trafficking [BR:
ipu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108265870
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108265870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
108265870
NCBI-ProteinID:
XP_017324157
Ensembl:
ENSIPUG00000013277
UniProt:
W5U762
LinkDB
All DBs
Position
5:31579722..31598367
Genome browser
AA seq
1103 aa
AA seq
DB search
MDPASDQTPKGLKRSPKKTPQSSGKRENSKHSNKPSLQEARNKGRRNRGKAEEEMTSKLK
IMDLHDKLKATGTGLVYSDVFARYHCLWDSSHPECPERVTAIVGMMETEGLLSRCVRVET
RAASDEELSLVHTKEYVDLMRSTQKMTEEELKCVSERYDSIYLHPNSFSCACLATGSVLQ
LVDKVMTSELRNGFAVCRPPGHHAQAELMNGYSMFNNVAVAARYARKQHGVQRVLIVDWD
VHRGQGVQYAFQEDPSVLYFSVHRYEESLFWPHLPEGDSGAVGSGPGEGYNINVPWNKTG
MEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDAVVGDPKGEMCASPQCFSVLTHMLMGL
AEGRIVLALEGGYNLQATAEAACASLRSLLGDPCPHLNSPGAPSESALKSIAKTVSALYP
FWTSLQTLEGGPLSEAEPLPSAVCVEKLESSVKVTGLVYDERMMEHHNMWDSHHVELPQR
IFRIFSHHEDLGLVDRCQRIPARLATEDELALCHGSEHIATIKSTEQMKPRDLNRLGDEY
NSIYISKESYKCALLAAGACFSVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTA
ALTARYAQSITHNTLRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYDEGTFFPYSEDA
DYDKVGRGKGTGYNVNIPWSRAKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARG
DPLGKYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLTSISTSMAMCTSMLLGDTPPLL
PPLPPPHPSASISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKTKHTPAGKGKNSPP
QVTPQQQHQRTAVTTSPASPNTDQEDSGLDELTQGLRCLDLSTSTISASSSPASVPVGGA
RPKVKPSPQRDSTEVQEVSPVPVIESGIVDGDAKAESTPSKQEEQSEPQAEESDAGAVCD
QESPALEGACGYTKKSVFELVCSAADVAGDTMYVVDPLAWCPHLESVRAVPAGGIDVFRP
CEECGAETENWICLCCYKVLCGRFVNEHMVAHGQLSSHPLVLSFADLSVWCYSCESYVHN
KVLYEAKNAAHLAKFGEEIPPIN
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgcgtcagatcaaactccaaagggtttgaaacgctctccaaagaaaacgcca
cagagctctggcaagcgggaaaacagcaaacacagcaataaaccaagtctccaggaggct
agaaataaaggtagacggaaccgaggcaaagcagaagaggagatgaccagcaaactcaaa
atcatggatttgcacgacaagctgaaggcaaccggaactggcctggtttactccgacgtc
tttgcccgttatcactgcctgtgggactccagtcaccccgagtgtccggagagagtgacc
gctatagtagggatgatggagacggaggggctgctgtctcgctgcgtgcgggtggagaca
agagctgcatcagacgaggaactgtctctggttcacacgaaggaatacgttgatctcatg
aggtccactcagaagatgacggaagaggagctgaagtgtgtctctgagcgctatgactcc
atctacctccatcctaactctttctcatgtgcctgtctagccaccggctctgtcctccag
ctggtcgacaaggtgatgacatcggagcttcgcaatggcttcgccgtgtgcaggcctcca
ggacatcacgcccaggctgagctgatgaacggatactccatgtttaataacgtcgcggtg
gcggcgcgttacgctcggaaacagcacggcgtccagcgggttctgattgtggactgggac
gtgcatcgcggtcagggagtccagtacgccttccaggaggatcccagtgtcctgtatttc
tccgtacatcggtacgaggagagcttgttctggcctcacctgcccgagggagacagcggc
gctgtgggttcaggaccaggcgagggctacaacatcaacgtgccctggaacaagacaggg
atggaggacggagattacgtctcagcgttccagagaattctgctgcctgtagcctacgag
tttcagcctcaacttgtgttagtagccgctggctttgacgctgtggttggtgatccgaag
ggtgagatgtgtgcgagtccccagtgtttctctgtactgacccacatgctgatgggtctg
gccgagggccggatcgtgctcgcgttggagggaggatataacctgcaggccacagcagag
gcggcttgtgctagtttgaggtcactcttgggtgacccctgccctcatctgaactcgcca
ggagctccgagtgagagtgctctaaagtccatcgctaagacagtttctgctctgtatccg
ttttggaccagcctgcagactctggagggaggccctctatccgaggcagagcccttaccc
tcagccgtatgtgtggagaaattggaatcttccgtgaaagttaccggactcgtttatgac
gagcgtatgatggagcatcacaacatgtgggacagccatcacgttgagctccctcagaga
atcttccggatcttctcccaccatgaggatttgggactcgtggaccgttgccagcggata
ccggctcgtttagccacagaggacgagctcgcactttgtcacggatcagagcacatcgct
acgataaagagcaccgagcagatgaagcccagagacctgaacaggctcggagacgaatat
aattccatctacatcagtaaagagagctataagtgtgcactcctggcagctggagcatgt
ttcagtgtagctcagtccatcctcactggtcaggtgaggaacggtgtggctatcgtacgc
ccccctgggcatcacgcagagagagacaccgcctgcggattctgcttcttcaacacggct
gccctgaccgcccgctatgctcagagcattacccacaacaccctgcgcgtcctcatcctc
gactgggacgtgcaccatggcaacggcacacaacacatttttgaggatgatgacagtgtg
ctctacatctctctccatcgctacgatgaaggcacattcttcccctactcggaagacgcc
gattacgataaagtgggccgagggaaaggcacgggatacaacgtcaacattccctggagc
agagccaagatgggcgacccggaatatctagcagccttccaccatgtggtgatgccgata
gcacgagagtttgctccggagctggtgctggtgtcggccgggtttgacgccgctcggggt
gatccgttaggcaagtaccaggtgaccccggagtgctacgcccacctcacacatcagctg
ctgagtctagcagcaggacgagtgcttgtcattttagagggaggttataacctcacgtcc
atctccacatccatggccatgtgcaccagcatgctcctgggtgacacgcccccgctgctg
cctcccctgccccctccacaccccagcgcttccattagcatcaacaacgtcctgcgagca
cacgccccctactggagatctctcagaatacagattccagagtctctgcgtttgtccttg
ccttctcctaaacccaagaccaagcacacaccagcaggaaaaggcaaaaattctcctcct
caggtcacccctcagcagcagcaccaacgcaccgctgtgacgacttcaccagcatcgcca
aatactgatcaggaggactcggggctagacgagctcactcaaggcctgcgctgtctggac
ctcagcacatctaccatatctgccagttccagccccgcctctgtccctgtgggcggggct
agacctaaagtgaagcccagcccacagagggactccacagaagtgcaggaggtgtcgcct
gtccccgtgatagaaagcggtatagtagacggtgatgcaaaagccgagtccacgcccagc
aaacaggaggaacagtcagaaccacaggcggaagaatcggacgccggggcagtgtgtgat
caggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccgtcttcgagctc
gtgtgcagcgccgcggacgtggccggggatacgatgtacgtagtggaccctttggcgtgg
tgcccacacttggagtcagtgcgtgcggtgccagcagggggcatcgacgtgttccggccg
tgcgaggagtgcggcgccgagacggagaactggatctgcctctgctgctataaggtgttg
tgtgggcgttttgtgaacgagcacatggtggcccacggtcagctgtcctctcaccctctg
gtcctgagctttgctgatctatcagtgtggtgctactcctgcgagtcctacgtgcacaac
aaggtgctgtatgaagcaaagaatgctgctcatctcgctaagtttggggaggagattccc
cccatcaactaa
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