Ictalurus punctatus (channel catfish): 108266015
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Entry
108266015 CDS
T04658
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108266015
09124 Replication and repair
03420 Nucleotide excision repair
108266015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108266015
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108266015
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108266015
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108266015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_IFT140_2nd
Ge1_WD40
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
108266015
NCBI-ProteinID:
XP_017324438
Ensembl:
ENSIPUG00000008060
UniProt:
W5U7U7
LinkDB
All DBs
Position
5:27897327..27908319
Genome browser
AA seq
397 aa
AA seq
DB search
MLSFLTARQTGLDDPVRLRRAESTRRVLSLELNHDRDVERIHGNGVNCIDIEVIEGRYML
SGGSDGVIVIYDLENCSKKSHYTCKAVCTVGRSNCHVHKFSVETVQWYPYDTGIFVSSSF
DKSMKVWDTETLKPADVFEFDGNVYCHHMSPIARKHNLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEILSVQWSPRYEHILATASADGRVRMWDVRRAAGSLFTLDQYNGDKSKASSEA
VNTAHNGRVNGLRFTDDGLYLLTTGTDDRMRLWNSATGHNTLVNYGKVVNESRKGVKFTV
SRGCSPEFAFVPCGSSVTVYSLYTGKLVTTLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVLRQPDVEDEGKRGGDQAAVNPAFEDAWSSDED
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttcttacagccagacaaactggtttggacgatcctgtacgcttgagacga
gcagaatcaacaagaagggtgctgagtttggagttgaatcatgatagagatgtggaacga
attcatgggaatggagtgaactgtattgatattgaagtgattgaagggagatatatgtta
tcagggggttccgatggtgtaattgtgatctacgacctggaaaactgcagcaagaagtca
cattacacttgtaaagcagtttgtactgtaggcaggtcaaattgtcatgtgcacaagttc
agtgtggagacagttcagtggtatccttatgacactgggatatttgtatccagctcattt
gacaaaagcatgaaagtttgggacacagaaacactcaagccagctgatgtgtttgagttt
gatgggaatgtctactgccaccacatgtctcctattgccaggaaacataatctcatagca
gttggaaccaaagacccaaaagttcagctgtgtgatctgaagtctggttctcgcatccac
atcctacagggtcacagaggagagattctctctgtccagtggtccccgcgctatgagcac
atcctggccactgctagcgctgatggcagggtgcgtatgtgggacgtccggcgagctgct
ggaagcctctttactttagatcagtacaatggggacaagtctaaagcgtcttctgaagca
gtgaacacggcccataatggacgtgtgaacggcttgcgcttcactgatgatggcctttat
ctcctgaccactggcacagatgaccgtatgcgcctgtggaacagtgccacaggccacaac
acgctggtcaactatggaaaggtggttaatgaaagccggaaaggagtgaagttcactgtg
tcgagaggctgcagcccagagtttgcatttgtgccatgtggcagctccgttacagtgtac
agcctttacacaggaaagctagtgacgacattaagggggcattacaataatgtggactgc
tgcgagttccacccggactatcaggagctctacagtggtgggaaggactgtaacatcttg
gcgtgggttcctgtgctgcgtcaacctgatgtcgaagacgagggaaaaaggggtggagac
caagctgcagtaaatcctgcatttgaagatgcctggagcagtgatgaagactga
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