Ictalurus punctatus (channel catfish): 108266170
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Entry
108266170 CDS
T04658
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108266170 (sox1a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108266170 (sox1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108266170
NCBI-ProteinID:
XP_017324698
Ensembl:
ENSIPUG00000004246
UniProt:
A0A2D0R236
LinkDB
All DBs
Position
6:complement(32488827..32491468)
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AA seq
345 aa
AA seq
DB search
MYSMMMETDLHSPVPQTNTNPGQTGPNSGNKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAATGAGVGLGVSMSAAGVGQRLESPGGHGGSAGAGYSHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYGQHPGTGAHHHHHPHAHHHHPHNPQPMHRYDMSALQYSPISS
SQSYMSASPPGYGGISYSQHQNAGVASSAAIGTLSSLVKSEPNVSPPVSTHSRGPCQGDL
REMISMYLPAGESGEPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggacttgcactccccggtaccccagaccaatacaaac
ccggggcagacaggtccgaactcggggaacaaagccaaccaagagcgcgtcaaacgccct
atgaatgcttttatggtgtggtcccgcggccagcgccggaaaatggctcaggaaaatccg
aaaatgcacaactctgagatcagcaagagactcggcgcagagtggaaggtgatgtcagaa
gctgaaaagcggcccttcatcgacgaggcaaaaaggctgcgcgccatgcacatgaaagag
catccggattacaaataccgaccgaggcgcaaaaccaagacactgcttaaaaaggacaag
tactctctggctggcggtctgctcggcggagcggccacgggcgcgggagttggcctcggg
gtgagcatgagtgcagccggtgtaggccagaggttagaaagccccgggggtcacggaggc
tcagccggcgctggttactcgcacatgaacggttgggcaaacggcgcgtattcgggccag
gtggctgccgccgccgccgctgctgctatgatgcaggaggcgcagctcgcgtacgggcag
cacccgggcaccggcgcacatcaccaccatcacccccatgcccaccaccatcatccgcac
aacccgcagccaatgcaccgctacgacatgagcgctctgcagtacagccctatatccagt
tcacagagttacatgagcgcgtcgccgcccggctatggagggatttcctattcgcagcac
caaaacgcgggtgttgcgtcgtcggccgccatcggcacgctgagctctttggtcaagtcc
gagcctaacgtaagtcctccagttagcacgcactccagaggcccgtgccagggagacttg
agggagatgattagcatgtatttaccggctggagagtccggagaaccgtccgttcagagc
agactgcacgctttaccgcaacactatcagagcacgacggccggagtaaacgggactgtc
ccgctcacgcacatttga
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integrated database retrieval system
