Ictalurus punctatus (channel catfish): 108266236
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Entry
108266236 CDS
T04658
Symbol
phf11
Name
(RefSeq) uncharacterized protein phf11 isoform X1
KO
K23310
PHD finger protein 6
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108266236 (phf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108266236 (phf11)
03009 Ribosome biogenesis [BR:
ipu03009
]
108266236 (phf11)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108266236 (phf11)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
108266236 (phf11)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Other ribosome biogenesis factors
108266236 (phf11)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
NuRD complex
108266236 (phf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
108266236
NCBI-ProteinID:
XP_017324792
Ensembl:
ENSIPUG00000000737
UniProt:
A0A2D0R2E4
LinkDB
All DBs
Position
6:15251841..15270348
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AA seq
548 aa
AA seq
DB search
MRPESRSSDLQCVLCEITDETEITGPLSCKEGIAAHQNCLLYASGIYCKNSPTFDDLFGF
DVDDVKDEYKRGRKLTCAYCKRKGATAGCEVKSCKRSYHYPCAQKARALPEEDQSNGTFT
LYCEKHNPHASSGDSEKGSAKVCPSSSGRKSLETGEQDSSRGGSEQSCTPLSSHPKPSCS
IVSSSAKLQSPSFVLLFPLSDSETPPRRSQSRKRKFPEASFDSDETQSIIDPMFAPVESE
HEDSIPPVQNTQPPLDSEDRSRDNKEPRKGINYALSGDDEVCNDSDFESQSLLKTEYHHD
NVLFTVIADSGPSIESVADNNSDPCSPAEPSPADTPLIKFDQSVSAQEQTADLHSNITIP
ENSPVRARLSFDFPQSGGATDKSSSVQEVLCGDLPIKVKGCKSQEIPPLMTNELKGSHVK
CPHDHPLDLTAPGGCCMAHVEFCEPVGHVGVSDSGAALFWRRCNEVGCTEDIFTELTRQL
TCLAERVQNRHATQQDYAVSLKILEASGKLPAIFRQVEQDLENQERELQRKREALRDVKA
VLDENKLI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccagaatctcggtcctcagatctgcagtgtgttctgtgtgaaatcacagatgag
acggaaatcacaggtcccctgtcatgtaaagagggcattgctgcccaccagaactgtttg
ctatatgcatctggaatctactgtaaaaactctcccacctttgatgacctgtttggcttt
gatgtggatgatgtgaaagatgagtacaaacgaggaagaaaactaacatgtgcctactgt
aaacgcaaaggagctacagctggttgtgaggttaaatcctgtaagcgctcctaccattac
ccgtgtgcccagaaagctcgtgcattacccgaggaggaccaaagcaacggcaccttcacg
ttatattgtgaaaagcataatccacatgccagcagtggtgattcagaaaaaggaagtgct
aaagtatgtccttctagttctggccgtaaaagcttagagacaggtgaacaggacagcagt
cgtgggggatctgagcaaagctgtacccccctgtcatctcatcccaagcccagctgctct
attgtgtcctcctcagccaagctgcaaagcccttccttcgtcctgcttttcccgctgagt
gactcggaaacacctccgagacggtcccagagtaggaaaaggaaatttccggaagcatct
tttgactcggatgaaactcagagcatcattgatccaatgtttgcaccagtagaatcagag
catgaggatagcatacctccagtgcagaatacgcagccaccacttgactctgaagataga
agcagggacaataaggagcctagaaaaggaattaattatgctcttagtggtgatgatgaa
gtgtgtaacgattcggattttgagtcccagagtctgttaaaaacagaataccaccacgat
aatgtgctattcactgttattgcggattcaggaccttccattgaatcagttgcagacaac
aactctgatccctgttcccctgctgaaccaagcccagcagacactcctttgattaaattt
gatcagtctgtctctgcccaagagcagacagcagaccttcactccaacatcaccattcca
gaaaactcacctgtgcgtgcccgcctgtctttcgacttccctcaatccggcggcgccact
gataaatcctccagtgtccaagaagttttgtgtggagaccttcctatcaaagtcaagggt
tgtaaatctcaggagataccacctttaatgacaaatgagctaaaaggatctcatgtaaag
tgccctcatgatcatccactagaccttacagcaccaggagggtgctgcatggcacatgtt
gagttctgtgaacctgtaggccacgtgggtgtgtcggactcgggtgctgccctcttctgg
aggagatgtaatgaggtgggctgcacggaggacatattcacagagctcacacgtcagctc
acctgcttggctgagagggtgcagaatcggcatgccacacaacaggactacgcggtgtct
ctcaagatactggaggcatcagggaagcttcctgcgatattcagacaagtggagcaagac
ttggaaaatcaagaaagagagctgcagagaaagagggaggcattaagggacgtcaaggca
gtgcttgatgagaataaacttatctga
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