KEGG   Ictalurus punctatus (channel catfish): 108266286
Entry
108266286         CDS       T04658                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108266286
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108266286
   03036 Chromosome and associated proteins [BR:ipu03036]
    108266286
Spliceosome [BR:ipu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108266286
 Complex B
    108266286
 Complex C
   U2 SnRNP specific factors
    108266286
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108266286
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ TPR_DNAAF5 HEAT_EF3_N HEAT_MROH2B_C HEAT_ECM29 TPR_IPO5 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG PIK3R4-like_middle Adaptin_N Phage_T7_Gp15 GST_N_4
Other DBs
NCBI-GeneID: 108266286
NCBI-ProteinID: XP_017324867
Ensembl: ENSIPUG00000013171
UniProt: A0A2D0R2M8
LinkDB
Position
6:complement(2272956..2284187)
AA seq 1314 aa
MAKIAKTHEDIEAQILEIQGMKAALQEEGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTTLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPNTTPKKVSSWDQADSSVETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFPE
GYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPFVRYELDYFL
NT seq 3945 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagatatcgaggcgcagatcctggagatccagggc
atgaaggcggcgctgcaggaggagggagatcagggtgtcggcctggattctaccggatac
tacgaccaggagatctacgggggaagtgacagtcgttttgccggatacgtcacatctatt
gctgccaatgagcaggaggaggatgatgaggaggactcttctacaactctgcttggccag
aagaaaccggggtatcatgctccggtggcgatactcaatgccattcctcaatcagatgag
cagtacgatccttttgctgagcatcgcccacagaagatctccgatcgcgaagacgagtac
aagaggcgcaggcaaaagatgatcatctcccctgagcgtcacgaccctttcgcagacggg
ggcaaaacgccagatcccaagatgcctgcccggtcgtatatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcggtcaatggctctgctgcgtctcaagccgctgctcccaagcgcaagcgt
cggtgggaccagactgctgaccagaccccaaacactactccaaagaaagtgtccagctgg
gatcaggcggatagctcagtagagacaccgggacacacacccggacacacgccttcaaac
agtcgctgggacgagacgcccggtcgtcccaagggtagcgagactcctggagccaccccc
agttcacgcatgtgggaccccacgcccagccacacacctgccggcgccgcgacgcctggc
cgagacacccccgggcacgccacgcccggtcacggcggtgccacgtccagtgtgcgcaaa
aaccgctgggacgagactccgaagacagaaagagagacacctggccatggcagtggctgg
gccgagacccctcgtacagaccgaggggatgagtctgtcggagagaccccaactcctgga
gcaagcaaaagaaagtcccgttgggatgagactcctgccagtcagatgggctcctccact
ccgctgctcacccctggaaagacccctattggcacaccagctatgaatatggccacaccc
actccaggtcatctgatgagtatgactcccgagcagcttcaggcgtggcgctgggagaga
gagatcgacgagcggaaccgtccgcttactgatgatgagctggacgcgatgtttccggaa
ggctacaaggtccttcccccaccagcaggctatgtgcccatccgcacccctgcccgtaag
ttaaccgccaccccgacgcccatcggcggcatgacaggcttccacatgcagacggaagac
cgaaccaccaaacagatgaacgaccagccgtccggcaacctgcctttcctgaaacccgat
gacatccagtacttcgacaaacttctggtggaggtggacgagtccactctcagtccagag
gagcagaaggagcgcaagatcatgaagctgctcctgaaaataaaaaacggcacccctccc
atgaggaaggctgctctcaggcaaatcacagacaaggccagggaatttggtgccgggcct
cttttcaatcagattctgcccctgctaatgtctcctacccttgaagatcaggagcgccat
ctgttggtgaaggttatcgaccgcatcttgtacaaactggacgatttggttcgaccttat
gtccacaaaatccttgtcgtgattgaacccttgctgattgatgaagattactacgctagg
gtagaaggcagagagattatctctaacttggcaaaggctgctggtctggccactatgatc
tccacgatgaggcccgacatcgacaacatggacgagtacgtgagaaacacgaccgctcgt
gcctttgctgtcgtggcgtccgctctgggtattccttccctcctgcctttcctcaaagcc
gtgtgtaagagcaagaagtcgtggcaggctcggcacacgggaattaaaatcgtgcagcag
atcgccatcctcatgggttgtgccatcttgcctcatctccgcagcttggtggagattatc
gaacacggtcttgtggatgagcagcagaaggtgcgaaccatcagtgctttggccatcgct
gctcttgcagaggccgccacaccctacggtatcgagtcttttgactccgtgctgaagccc
ctttggaagggtatcagacaacaccgaggcaagggtctggctgctttcttaaaagccatc
ggatacctgattcctcttatggatgccgagtacgccaactactacacgagggaggtgatg
cttatcctcattcgagagttccaatctccagatgaggaaatgaagaagattgtcctgaag
gtggtgaagcagtgctgtggaacagacggtgtggaggctaactacatcaaaaccgagatc
ctgccgcctttctttaaacacttctggcagcaccgtatggccttggacagacgtaactat
agacagttggtagacactacggtagagctggccaacaaagtcggtgcagcagaaatcatc
tcgaggatcgtggacgacttgaaggatgaagctgagcagtacagaaagatggtgatggag
acaatagagaagatcatgggtaacctgggagcagcagacatcgaccacaaactggaggag
cagcttattgatggcatcttgtatgctttccaagaacagaccactgaggactctgtgatg
ctgaacggtttcggaacagtagtgaatgccctgggcaagcgggttaagccctacctgcct
cagatctgcggtacagttctgtggcgtctaaacaacaagtcggccaaagtccgtcagcag
gccgccgacctcatttctcgcacggctgtggttatgaagacctgtcaagaggagaagctc
atgggtcatttgggtgtcgtgctgtacgagtacctgggagaggaataccctgaagttctt
ggaagcatcctcggagcacttaaagctatcgttaatgtcattggtatgcacaagatgacg
cctccgattaaggatttacttcctcgactgacaccgatcctgaaaaacagacacgaaaag
gtgcaggagaactgcatcgatctcgtgggcagaattgctgacagaggtgcggagtacgtg
tcggccagggagtggatgcgaatctgtttcgaactgctggagctgctgaaagctcacaag
aaggcgatccgacgagccacggtcaacactttcggctacatcgccaaggcgatcggacct
cacgacgtgcttgccacgctgcttaacaacttgaaagtgcaagagcgtcaaaaccgagtc
tgtacgacagtagcgatcgccatcgtggcggaaacgtgctcgcccttcaccgtactccca
gcgctgatgaacgagtaccgtgtacccgaactgaacgttcagaacggtgtgctcaaatcc
ctctccttcttattcgaatatatcggagagatgggtaaggactacatctatgccgtgacc
ccgttattggaggacgctctgatggacagagaccttgtgcataggcagacggccagcgct
gtagtgcagcacatgtctctgggtgtgtatgggttcgggtgcgaggactccctcaaccac
ttgctcaactatgtttggccgaacgtttttgaaacgtcgccgcacgtaatccaagccgta
atgggagccctcgagggactccgtgtggcgatcggaccgtgtcggatgttgcagtattgc
ctgcagggtttgttccatcctgcgcggaaagtccgtgatgtgtactggaagatttataat
tccatctacatcggctcccaggatgctctgattgcacattatcccctcgtctacaacgac
gagaagaacccgttcgtccgctacgagctggattactttctgtga

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