Ictalurus punctatus (channel catfish): 108266305
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Entry
108266305 CDS
T04658
Symbol
usp9
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108266305 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108266305 (usp9)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108266305 (usp9)
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108266305 (usp9)
Ubiquitin system [BR:
ipu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108266305 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
DUF2259
DUF2014
Motif
Other DBs
NCBI-GeneID:
108266305
NCBI-ProteinID:
XP_017324886
Ensembl:
ENSIPUG00000023161
UniProt:
A0A2D0R2Q4
LinkDB
All DBs
Position
6:20728409..20768648
Genome browser
AA seq
2607 aa
AA seq
DB search
MTATTRGSPMGGNESQEQGQAPDGQSQPPLPQNQTSTPTSSNENSPVSPPDEQVQGDCTG
QLEEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLCKKGLDVKCEACQ
RFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLMELCVTKLSQDWFPLLELLAMA
TNPHCKFHIYNGTRPSETVPAGVQLAEDELFARPPDPRSPKGWLVDLINKFGTLNGFQIL
HDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKE
AKNEAKNDALSMIIKSLKNLASRVPGQEETVKNMEIFRLKMILRLLQISSFNGKMNALNE
VNKVISSVSYYTHRHGNPEEAEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKIL
RFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKESWT
NASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILD
YSCSQDRDTQKIQWIDRFIEELRSNDKWVIPALKQIREICSLFGEAPQNLRRKIPINLTS
LASQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMENMRQFSKAEHTDFDPQTVRP
GSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKL
MGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRVYMMD
DLELIGLDYLWRVVIQGSDDIANRAIDLLKEIYTNLGPKLQATQVEIHEDFIQSCFDRLK
ASYDTLCVLDGDKDSINCARQEAIRMVRVLTVLREYITECDSDYHEERTILPMSRAFRGK
HITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRCILNRIKANSAHTKIELFIGGDIIDPA
DDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVES
CLPGVIMSLHLRYISFLWQVADLGCSLNMPLLRDGARVLMKLMPPDNTTVENLRAICLDH
AKLGESSLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASGTLGEDASDFQYNFLRSGGLP
LVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPVADGNIPV
SPINQATHDQALVLQSALQNIPNPSAECMLRNVAIRLAQQISDENFFQASKYIPDIGVIR
AVQKIVWASGCGSIQLVFSSIEEISNIYEKTNAGNEPDAEDEQVCCEALEVMTLCFALIP
TALDALSKEKAWQTFIIDLLLHCQSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTV
LGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIKDEVKRTGET
GVEETILEGHIGVTKELLAFQTAEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKS
GEFPPEQAIPVCSTPATITAGFELLVALAVGCMRNLRQIVDTLTDMYYSGCEALTEWEYL
PPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGSDVDDDMSGDEKQ
DNESNVDPRDEVFSYHHQFDDKPALNKSEDRKEYNIGVLRHLQVIFGHLASSRLQYYVPR
GFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQ
GCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLL
IKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGSDVHPENQ
VIQQNEPSEPEAPCSSRYRLVGVLVHSGQASGGHYYSYIIQRNGSGSEGETNRWYKFDDG
DVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDS
ELVKYISELTVSSKPHQIKMPPAIECSVRKQNVQFMHSRMQYSLEYFQFIKKLLTCNSVY
LNPPPGQEHLLPEAEEMAKISIQLAARFLFSTGFHTKKAVRGPASDWYDALCILLRHSKN
VRCWFAHSALFSYPNRFSEYLLESPSAEVRGAFSKLIVFIAHFSLQDGPYPSPVASPGPS
SQGCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLGVPA
TFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVTSRMQSSINGNPPLSNPYGDPS
LTQPIMPLHQLVAEILFVRTSYVKKIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLW
QVAYSYTYELRPYLDLLLQILLVEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKR
AYQCIKCMVALFSNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNAQYTYNNWS
PPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKHEVVSEEDAGRKLSSPQQLLP
GEVTGQQQHTEQDEQEAPDDQDSSPPEDTSLYPHSPGTQYQQQNNLPHGQPYTGPAAQHM
NNPQRPGPRAQENWEPPEEVPPAQTKE
NT seq
7824 nt
NT seq
+upstream
nt +downstream
nt
atgactgccacgacccgtggctcccccatgggggggaatgaaagtcaggagcaaggccaa
gctccggacggtcagtctcagcccccactgccccaaaatcagacgtccactcccacatcg
tccaatgagaactctccagtgagtcctccagatgagcaggtccagggagactgtacaggc
cagctggaggaggaggaggagccggctttcccccacacagacctggccaaactggatgac
atgatcaacagaccccgctgggttgttccagttttgccaaagggtgaattagaggttctt
cttgaagctgctatagatctttgcaaaaaaggacttgatgtcaagtgcgaagcctgccag
cgatttttccgtgatggtttgacaatatctttcaccaaaatactgactgatgaggctgtc
agtggatggaaatttgaaatccataggtgcataatcaacaacacccatcgtctgatggaa
ctgtgtgtgaccaagctctctcaggactggtttcctctcctagagctcttggccatggcc
acaaacccccactgcaagtttcacatttacaatggtacccggccctcagagacggtgcct
gctggggtgcagctggctgaagacgagctcttcgctcgcccacctgaccctcgctctccc
aagggctggttggtggatttaataaacaaatttggcacgttaaacgggtttcaaattctg
catgatcgattcatgagtggtcaagctctgaatgttcagatcatcgctgcactcataaag
ccttttgggcagtgctatgagtttctcactttgcacacggtgaagaagtacttccttcct
gttatagaaatggttccccagtttctagaaaacctcactgatgaggagctgaaaaaagaa
gccaagaatgaagccaaaaacgatgccctgtctatgataatcaagtcattgaagaacctg
gcttcacgagtaccagggcaagaggaaacagtgaagaacatggagatttttaggttaaaa
atgattcttaggttattgcaaatttcttcttttaatggcaaaatgaatgcactaaatgaa
gtaaataaggtgatctcaagtgtctcgtactacacacaccgtcacggcaacccagaagag
gcagagtggctcacggcagagcgcatggcggagtggattcagcagaacaacattttgtcc
attgtgctgcgggatagccttcatcagccccagtatgtggagaaactggaaaagatcctg
cgctttgtcattaaggagaaagctcttacgcttcaggacctggacaacatttgggctgca
caggctgggaagcatgaggctattgtgaagaatgttcatgatctccttgcaaaattggca
tgggatttctcacctgaacaactagaccatctttttgactgttttaaggaaagctggaca
aatgcaagtaaaaagcaacgggagaagttactggaactaattcgtaggctggcagaagat
gataaagatggtgtgatggcacacaaagtgctcaatctgctctggaacttggcccatagt
gatgatgttcctgtggatatcatggaccaggccctcagtgctcatatcaagatcttggac
tacagctgttcccaggaccgagatacccagaagatccagtggatagatcgcttcattgaa
gagttgcgatcaaatgataaatgggtaatccctgcactgaagcaaattcgagagatctgc
agtctgtttggagaggctcctcaaaatctcagaaggaaaatacctattaacttaacaagc
ttagcaagtcaaacgcagaggagcccacatgttttttatcgccatgatcttattaaccaa
ctccagcacaatcatgcattggtcactctggtagctgagaatctgtctgcatacatggag
aatatgaggcagttctctaaagcagagcacacagactttgaccctcagacggtcaggcct
ggaagtcgatacagtcatgtgcaggaagtgcaggagcgtctgaactttttgaggttcttg
ctgaaggatgggcaactgtggctctgtgctcctcaggccaaacagatctggaagtgcctg
gcagagaatgcagtgttcctttgtgatcgtgaagcctgcttcaaatggtactccaaactg
atgggggacgagccggaccttgaccccgacatcaacaaggacttttttgagaacaacgtg
ctccagctggatccttctctgctgactgaaaacggcatgaaatgctttgagcgcttcttt
aaagcagtgaactgcagagagggcaagctggtggccaagcgccgagtgtatatgatggat
gacctggaactgattggactggattacctgtggagggttgtgatccaaggaagtgatgac
attgctaaccgagcgattgatttacttaaagagatctatacaaaccttggaccaaaatta
caagccactcaggtggagatccatgaagattttattcagtcttgctttgaccggctcaaa
gcctcctatgacacgctgtgtgtgctggatggagataaggacagcattaactgtgccagg
caggaggccatccgcatggtgcgcgtcctcactgtgctcagggagtacatcacagaatgt
gacagtgactaccacgaggagagaaccatcttgccaatgtccagagcgtttcgtgggaag
cacatcaccctcattgtgcggtttccaaaccaaggtcggcaggtggatgacctggacatc
tggtcccacaccaacgacaccattggttctgtgagacgctgcattctcaatcggataaag
gcaaacagcgcgcacaccaagatcgagctcttcatcggcggggacatcattgatcctgct
gatgacaggaaattgattgggcaactcaatctcaaagacaaaacacttatcacggccaag
ctcacccaggtcagtgccaacatgccttcaagcccagacagctcctccgactcttccacc
ggctcccctgggaaccatggcaaccactatagcgatggaccaaaccctgaagttgagagc
tgtcttcctggagtgataatgtccctgcacttgcgctacatctcattcttgtggcaagtt
gctgacctgggctgtagtctcaatatgcctcttctgcgagatggagctcgggttcttatg
aagctcatgcctccagataatactacagtggaaaacctgagagccatctgcctggatcat
gccaaactcggagaaagcagccttagccccaccctcgactcccgcttctttggtccatca
ccttcacaagtcctttacttgatagaggtggtttatgccttactgatgccagctagtggc
acactgggagaggatgctagtgacttccagtacaatttcttgaggagtggcggcctacct
ttggtcttgagtatgctgacccgaaataatttccttccaaatgctgacatggagacacgc
cgaggagcctatctcaatgcactaaaaatagccaagctcctgcttacagcggtgggcttt
ggtcatgtgaaggctgtggctgaagcttgccagcctgtggcagacgggaacatcccagtg
tcacctataaaccaggccactcatgaccaggcgctggtgcttcaaagcgccctgcaaaac
atcccaaatccctcagctgagtgcatgctgcggaacgtggccatccgtctggctcagcag
atctctgatgagaattttttccaggcctctaagtatatcccagacattggtgtgattaga
gcggttcagaagattgtctgggcctctggttgtggttctattcaacttgtcttcagttcc
atcgaggagatcagcaacatctatgagaagactaatgcagggaatgagccagatgcagag
gatgagcaggtatgctgtgaggccttggaggtcatgaccctgtgctttgcccttatcccg
actgcgctagatgcacttagcaaagagaaggcctggcagaccttcatcattgacttactg
ttgcactgtcaaagcaagtctgttcgccaaatggcccaagaacagttcttcctcatggcc
actaggtgttgcatgggtcacaggcctctcctgttctttattaccctcctcttcacagtt
ttaggtagcactgcaaaagaacgagccaagcacgctggtgattacttcaccctcttgagg
cacttgctcaactacgcatataatagcaatatcaacctccccaatgcagaagttcttctc
aacaatgagattgattggttaaaaaggatcaaggatgaggttaagagaactggagagacc
ggggtggaagagaccatattagagggtcatatcggtgtcacaaaggagctactggctttc
cagacagcagaaaagaagtattacataggttgtgaaaaggggggagccaacctcatcaag
gagctgatcgatgacttcatcttccctgcctctaatgtgtacctgcaatacatgaagagt
ggagagttcccccctgagcaggccatacctgtgtgtagcactcctgccaccatcacagct
ggctttgaactcctggtcgcacttgctgttggatgtatgcgcaatctccgacagattgtt
gacaccctaactgacatgtactactcgggttgtgaggcacttacagaatgggagtatttg
ccaccagtaggcccaaggcctactaaaggcttcgtagggctgaagaatgcaggtgccact
tgctatatgaactcggtcatccaacagctctacatgatcccacccatcagaaacggcatc
ttggctattgagggcacaggcagcgatgtggatgatgacatgtctggagatgagaaacaa
gataatgagagcaatgtcgatccacgtgatgaggtcttcagttatcaccaccaatttgat
gacaagccagcactcaataaatcagaggacaggaaagagtacaacattggggttcttcgc
cacctgcaggtgatctttggacatcttgcttcttcccgactgcagtactatgttcccaga
ggcttttggaaacagtttaggttgtggggtgagccggtgaatctgagagaacaacatgat
gccctggagttcttcaactcgcttgtagatagtttagacgaggctttaaaagcactgggc
catcctgccatgctgagtaaagtcctcggcggttcctttgctgatcagaagatctgtcag
gggtgccctcataggtatgaatgcgaggaatcctttacaacactgaatgtagatataaga
aatcatcagaatctgcttgattccatggagcagtatgtgaagggtgacttgcttgagggt
gctaatgcctaccattgtgaaaaatgcaacaagaaagtggacacagtgaagcgcttgctt
attaagaagttgcctccagtactggccatccagttgaagcgatttgattatgactgggaa
cgggagtgtgctattaaatttaatgattactttgagtttccccgtgagctggacatggag
ccctatacagtagcaggagtagccaagctggaaggctctgatgtccaccctgagaatcag
gtcatccagcagaacgaaccctccgagccagaggcaccatgcagctcacgctataggctt
gtgggggtgctagtgcactcaggccaggccagcggtggtcactactactcttacattatc
cagaggaatggcagtggcagcgagggtgaaacgaatcgctggtacaagtttgatgatggc
gatgtcacagagtgtaagatggatgatgacgaggagatgaagaaccagtgctttggggga
gagtacatgggtgaagtgttcgaccacatgatgaagcgcatgtcctaccggaggcagaag
cgctggtggaatgcctacatcctcttctacgagcgcatggactcactggacaaggatagt
gagctggtgaaatacatctccgagctgacagtaagcagcaagccacaccagatcaagatg
ccaccagccatcgagtgcagtgtacgcaagcagaacgtgcagttcatgcacagccgcatg
cagtacagcctggagtactttcagttcatcaagaagctcctaacctgtaatagcgtctat
ctgaaccctccaccaggacaagaacatcttttgcctgaagcagaagaaatggctaagatt
agcattcaactcgctgctcgattcctcttcagcacaggatttcataccaagaaagctgtc
cgtggcccagccagtgactggtatgatgccctgtgcatactccttcgacacagcaagaat
gtacgctgctggtttgcacacagtgccctattttcctacccgaaccgcttctcggagtac
ctgctcgagagccctagtgctgaggtgcggggggctttctccaagctcattgtatttatt
gcacatttttctctgcaagatggaccctacccgtcacctgttgcctcaccaggaccatcc
agtcagggctgtgataatctgagcctaagtgaccacttgttacgtgctgtgctcaatctg
ttacggagagaagtgtcggagcatggccgtcacctgcagcagtacttcaacctctttgtc
atgtatgccaacctaggtttggcggagaagacccagctgttgaagcttggtgtgccagcc
accttcatgctggtggcactggatgagggcccaggcccacccattaagtaccagtatgct
gagctggggaagctgtacacagtggtgtcgcagctggtgcgttgctgcgatgtaacatcc
cgtatgcagtcctcaatcaatggtaatcctcctctctcaaacccgtatggtgatcccagc
ttgactcagcccatcatgcctctgcatcagctggtggccgagatcctgtttgtgcgtacc
agttatgtgaagaagatcattgaggattgcagtaactccgaggagaccatcaaactgttg
cgcttctgctgctgggagaacccgcagttctcctctactgtgctcagtgaactactgtgg
caggttgcttactcctacacgtatgagctaaggccttacctggacttgctgctacagatc
ttgcttgttgaagactcttggcaaactcacaggatccacaatgtgctcaaggggatccca
gatgaccgtgatggcctgtttgacaccatccagcgctctaaaaatcactaccagaagaga
gcttaccagtgcatcaagtgcatggtggctctattcagcaattgctcagttgcctatcag
attctccagagtaatggagacctgaagagaaagtggacatgggctgtagagtggcttggt
gatgagctagagcgcaggccatatactggcaatgctcagtacacatataacaactggtca
cctcctgttcagagcaacgagacctccaatggctacttcctggagcgttcccacagtgcc
cgcatgactttagccaaggcctgtgagctgtgcccagaggagtgtcacttaacgaagcac
gaggtggtgtctgaagaggacgcaggccggaagctgtcctcgccacagcagcttttgcca
ggggaagtgacaggccagcagcaacacactgagcaggatgagcaagaggcccctgatgac
caggactcctctccaccagaagacacgtctctgtatccccactctccagggacacagtat
caacagcaaaacaaccttccccacggtcagccgtatactggcccggcagcacagcatatg
aacaatcctcaacgtccaggtccacgagcacaagagaactgggagcccccagaagaggtg
ccacctgcccagactaaagagtag
DBGET
integrated database retrieval system
