Ictalurus punctatus (channel catfish): 108266329
Help
Entry
108266329 CDS
T04658
Symbol
vars1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
108266329 (vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ipu01007
]
108266329 (vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108266329 (vars1)
Enzymes [BR:
ipu01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
108266329 (vars1)
Amino acid related enzymes [BR:
ipu01007
]
Aminoacyl-tRNA synthetase
Class I (U)
108266329 (vars1)
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
108266329 (vars1)
Prokaryotic type
108266329 (vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
GST_C
tRNA-synt_1_2
Val_tRNA-synt_C
Arc1p_N_like
GST_C_2
GST_C_3
Jag_N
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
108266329
NCBI-ProteinID:
XP_017324942
Ensembl:
ENSIPUG00000005218
UniProt:
A0A2D0R2W6
LinkDB
All DBs
Position
1:10445193..10474931
Genome browser
AA seq
1271 aa
AA seq
DB search
MDSLHVSSHPDDFRSLLVLIAAEYCPTHPRVCVKECPTNVVHSQPALVLGGSEGTTLCGA
SAVSWYLASAGKKVGSDAKQQSQVWQWLSFTENELIPVACAVAFPLLGVTGIDKKLQQSS
LGELLRVLKILDQALEPRTFLVGESVTLADMSVVTAVLLPFKYVLEPSNRKSLVNVSRWF
DTCVNQPQFLKVLGKISLCEKMVPVTPKPNPVSSDAVANDNPSNGTAANGPPKTEAQLKK
EAKKREKLEKFQQKKEMEEKKKQMQSQSEKKAKPEKKELGVITYNIPTPAGEKKDVLSPL
PDSYSPQYVEAAWYSWWEKQGFFKPEYGRKSISEVNPRGIFMMCIPPPNVTGSLHLGHAL
TNAIQDCLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLMRERGMTRHDLGRENFIEEV
WKWKNEKGDRIYHQLKKLGSSLDWDRACFTMDSKLSYAVQESFIRMHEEGVIYRSKRLVN
WSCTLNSAISDIEVDKKELTGRTLLPVPGYKEKVEFGVLVSFSYKIEGSDEEVVVATTRI
ETMLGDTAVAVHPNDSRYQHLKGKVAVHPFCERKLPIVFDDFVDMNFGTGAVKITPAHDH
NDYEVGERHKLPFINILDENGFLINVPPPFLGMKRFEARKAVLQALKDRGQFKEIKDNPM
VVPVCSRSKDIVEPLLKPQWYVDCAGMGKQAADVVRNGELKIIPEHHLKTWFNWMDNIRD
WCISRQLWWGHRIPAYFITVNDPSVKPGEDVDGHYWVSGRSEEEAREKAAKRFNVTADKI
SLRQDEDVLDTWFSSGIFPFSIFGWPNENEDLSVFYPGTLLETGHDILFFWVARMVMMGL
KLTGKLPFKEVYLHAVVRDAHGRKMSKSLGNVIDPLDVITGISLEGLHDQLKDSNLDPLE
VEKAKQGQKSDYPNGIPECGTDALRFALCAYTSQGRDINLDVNRILGYRYFCNKLWNAVK
FSIKTLGEGFVPWEKAQLCGSESVSDRWILSRLCAAVALCGNGFQEYDFPAITTAIYNFW
LYELCDVYLESVKPVMGRTDAEGQKQADICRQTLYTCLDVGLRLLSPMMPFVTEELFQRL
PRRQAQDSPPSISVTPYPDTSEFCWHSEELDHQMEFVMTVVRTIRSLRADYNLTKTRADC
YLQCIDATTAALVEKYSLQIQTLSYSQAIHLVTGSESAIPEGCAVAIASDKCTVHLMLKG
SIDVEKEVAKLSTKKGELEKQMEKVEEKMKKSDYREKVPAKVQEQDAEKLRQSQTELQKV
TEAIENFRRMM
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggactctctgcatgtgtcctctcaccctgatgacttcaggagtttgctggtcctgatt
gctgctgaatactgtcccacccacccacgtgtgtgtgttaaggagtgtcccactaatgtt
gtccactctcagcccgcgctggtcctgggaggaagtgagggaacgacgctgtgtggtgcc
agcgccgtcagttggtacctggcatccgcgggcaagaaggtgggcagcgatgccaagcag
cagagccaggtatggcagtggctgagcttcaccgagaacgagctgattcctgtggcctgt
gctgtagccttccctctgttaggggtgacgggcattgacaaaaagcttcagcagagttcc
cttggagagttactgcgtgttctgaagattctagatcaggctttagagccacggacgttc
ctggtcggtgagagtgtgactctggctgacatgagtgttgtgactgctgtgctgctgcct
ttcaaatatgtgttggagccttcaaacaggaagtcactggtgaacgtgagcagatggttt
gatacttgtgtgaaccagcctcaattcctgaaggtgttggggaaaatctcgctctgtgag
aaaatggtgcctgtgacgcccaaacctaatcctgtttccagtgatgctgtggcaaacgac
aatccttccaatggcacagctgccaacggtccacccaagaccgaagcccagctaaagaaa
gaggccaaaaagcgggaaaagttggagaagttccagcagaagaaggagatggaggagaag
aagaagcagatgcagtctcagtccgagaaaaaagccaaaccggaaaagaaggaactgggg
gtgatcacgtacaacatccccactccagccggagagaaaaaagacgtgctgagccctctg
ccggactcgtacagtcctcagtacgtggaggcagcctggtactcgtggtgggagaaacag
ggtttcttcaagcctgaatacgggcggaagagcatcagtgaagtgaaccctcgtggtatt
tttatgatgtgcatccctcctcctaatgtgaccggctctcttcatctgggccacgcctta
accaatgccattcaggactgcctgaccagatggcacaggatgagaggcgagaccacgctg
tggaacccgggctgcgatcacgctggcattgcgactcaggtggtggtggagaagaaactg
atgagggagagagggatgaccagacatgacctcggccgagagaacttcatcgaagaggtc
tggaagtggaaaaatgaaaaaggagatcgtatctaccaccagctgaagaaacttggctct
tccctggactgggaccgagcgtgtttcactatggattctaaactgtcctacgctgttcag
gagtcttttattcgtatgcatgaagagggggtgatctacaggagcaagagactggtcaac
tggtcctgcaccctcaactctgccatctccgatatagaggtggataagaaggagctgact
ggcagaactctgcttcctgtgccaggctataaggaaaaggtggagtttggagtgctggtg
tctttctcctacaagatcgagggatcagatgaggaggtggttgtggcgaccacacgtatc
gagaccatgctgggagatacagctgtggctgtgcatcctaacgattccagatatcagcac
ctgaaagggaaggtggcagttcacccattctgcgaacgaaagctgcccatcgtgtttgac
gactttgtggacatgaactttgggacaggtgcggtgaagatcactcctgctcacgatcac
aacgactatgaagtgggtgagagacacaaactaccctttatcaacatcctggatgagaat
ggcttcctcatcaatgttcctcctccattcctgggcatgaagcgtttcgaggcgaggaaa
gctgtgctccaggccctaaaggacaggggccagttcaaagagattaaagataatcccatg
gtggtgccggtgtgcagccgctctaaggacatcgtggagcctctgctgaagccgcagtgg
tatgttgactgcgcaggaatggggaagcaggcggccgacgtggtgaggaacggagagctg
aagatcattcctgagcaccacctcaaaacctggtttaactggatggataatatcagagat
tggtgtatctctcgtcagctgtggtggggtcacaggatcccggcgtacttcatcacagtg
aatgacccctcagtgaaaccaggagaggatgtagatggtcattactgggtcagtggacgg
tcggaggaagaagcccgagagaaagcagcgaagcgcttcaacgtcactgcagataaaatc
tcccttcgccaagatgaggacgtcttggatacctggttttcttctggaatctttccgttt
tccatcttcggatggccaaacgaaaacgaggacctgagcgtgttctatccaggcacgctg
ttggagacgggccacgacatcctgttcttctgggtggctcgtatggtcatgatggggctc
aaactcacaggcaaacttccttttaaagaggtgtatctgcatgctgtggtgagggatgcc
cacggcaggaagatgagcaagtctctgggtaacgtcatcgatcctctggacgtcatcact
ggaatctcactggagggtctccatgatcagctgaaggacagcaatctggacccactggaa
gttgagaaggctaaacagggacagaaatctgattaccccaacggaattccagagtgtgga
accgacgctcttaggttcgccttgtgtgcctacaccagccaaggaagggacattaacctg
gacgtgaacaggatcctgggttacaggtatttctgcaacaagctgtggaacgccgtgaag
ttttcgatcaagacgctaggcgagggcttcgtgccatgggagaaagctcagctgtgcggc
agtgagagcgtgtccgataggtggattctgtcccgcctctgtgctgccgtggccctctgt
ggaaacggattccaggagtacgacttcccagcaatcaccacggccatctacaacttctgg
ctctatgagctgtgtgacgtttatctggaaagcgtgaaacctgtgatgggccggacagac
gcagaaggccagaagcaagcggacatttgcaggcagactctctacacctgtctggatgtg
gggctccgccttttgtctcccatgatgcccttcgtcaccgaagagctcttccaacggttg
ccacggaggcaggcccaggacagcccccccagcatctcagtcaccccttacccagatacc
tcagagttttgctggcacagcgaggagctcgaccaccagatggagtttgtgatgaccgtg
gtcaggaccattcgatcactcagggccgactacaacctgaccaagacccgtgcagactgt
tatctgcagtgcatagacgctaccacagcagctctggtggagaaatacagtctgcagatc
cagaccctctcctactctcaggctattcacctggtcaccgggagcgaaagcgctatccca
gaaggctgtgcggtggccatcgcttcagacaaatgcaccgtccatctcatgctgaagggc
tcgattgatgtagagaaggaggtggccaaactgagcacgaagaagggcgagctggagaag
cagatggagaaagtggaggagaaaatgaagaagagcgactacagggagaaagttccggcg
aaggttcaggagcaggatgctgagaagttgagacagagtcagactgagctgcagaaagtg
acagaagcgatagagaacttcagaaggatgatgtaa
DBGET
integrated database retrieval system
