Ictalurus punctatus (channel catfish): 108266395
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Entry
108266395 CDS
T04658
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B isoform X1
KO
K07888
Ras-related protein Rab-5B
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
ipu04144
Endocytosis
ipu04145
Phagosome
ipu04148
Efferocytosis
ipu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108266395 (rab5b)
04145 Phagosome
108266395 (rab5b)
04137 Mitophagy - animal
108266395 (rab5b)
04148 Efferocytosis
108266395 (rab5b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108266395 (rab5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108266395 (rab5b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108266395 (rab5b)
04031 GTP-binding proteins [BR:
ipu04031
]
108266395 (rab5b)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
108266395 (rab5b)
Endosome - Lysosome transport
108266395 (rab5b)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108266395 (rab5b)
Exosomal proteins of other body fluids (saliva and urine)
108266395 (rab5b)
Exosomal proteins of colorectal cancer cells
108266395 (rab5b)
Exosomal proteins of melanoma cells
108266395 (rab5b)
GTP-binding proteins [BR:
ipu04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
108266395 (rab5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
Gtr1_RagA
RsgA_GTPase
MMR_HSR1
SDR-like
AAA_16
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
108266395
NCBI-ProteinID:
XP_017325093
Ensembl:
ENSIPUG00000023753
UniProt:
W5UJE6
LinkDB
All DBs
Position
6:18436017..18446351
Genome browser
AA seq
214 aa
AA seq
DB search
MSNRGNARTNGNLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQ
SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQR
QASPNIVIALAGNKSDLADKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAKK
MPKTDTQNPTHAARHRGVNLHDPDAQSSRSCCGN
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccgtgggaacgcaaggaccaacgggaacctaccccagaccaagatctgccag
tttaagctggtgctcctgggagacatggcagtgggcaagtccagcttggtcctgcgtttc
gtcaagggccagttcgatgagtttcaggagaccactattggagctgctttcttggctcag
tcagtttgcctggatgacaccacggtgaagtttgagatttgggacacagccggacaggaa
cgctaccacagcctggcccccatgtactaccgcggagcccaagcagccattgtagtgttt
gatattacgaaaccggagacgtttgagcgagcgaaggcctgggtgaaggagcttcagagg
caggcaagtcccaacatcgtcattgcgctggcaggaaacaagtccgacctcgcagacaag
agactggtggagtacgaggaggctcagacgtacgctgaagacacaggcttgttgttcatg
gagacctcggccaagactgctatgaacgtgaatgagttattcctggccatcgcaaagaag
atgccgaaaacagatactcagaacccgacgcacgccgcccgacacaggggagtcaacctg
catgacccagatgcccaatccagccgaagctgctgtgggaattaa
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