Ictalurus punctatus (channel catfish): 108266511
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Entry
108266511 CDS
T04658
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X2
KO
K06084
F-box protein 20
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108266511 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108266511 (lmo7a)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108266511 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108266511
NCBI-ProteinID:
XP_017325421
UniProt:
A0A2D0R5T9
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All DBs
Position
6:complement(22390151..22424426)
Genome browser
AA seq
1647 aa
AA seq
DB search
MMAESKEYRRSLVVTPKANTQFNQFLPSKEKQTGYVPAPLRKKRSDYRTDENRRSWASPM
FTEEDGSFSRIGTGSSSINELGTQSSTQVAWPFGYESSDSEADRPDPDLLLDDLASRRFH
TPSVITPTNFALPMTSGDSTTMPQTTRPKVMLTNVPRPTLTYLSSETRPPQKAARRSASA
DVYMYDDSAEEDDEIGYADPVQDDLYARKVGLTVSQPISTVHHDKFLPKFWTPEEDIHVQ
KIRLGSQRRPWYRKIQGFSQKKSGSSSEDSDCDVSPRHCVSSPSHSEPTSLHAQTSQLSP
ITPSPTTQPLMLMQQTSGAQRFQLPDFWPRPDPTSGPRLIKCKRHPLLGREHPNDPYNVS
EDILPDLDNDDMFSRRTCAFNSNTELARMKYGGLLTSHHRSEPSIRVVTQHNDGKSTYPD
IEKDDVLTRRLQHHSTLHPLSGAPNNYHPVPIPESWALPQKLQAKISAPCPPIQVAAQVC
AKQKGDAHRKTDDMLVRKFGIVHVQNPTEVSQRSFGTQTGPSVPSSCSEEDLQKWHAIRE
ASRLRYKKRLMVERLMQKNSETDGSVSLSDIPVEQAVQSVRYEELKKFRENLKESEDKWQ
DDLNKWKSRRRSVNSDIMKKKEEREQIETLTIGSSTRKSKTFKEMEEERESQTPGFRSRF
ATFSTSEDQDVFDEPTPKTRVLPSRSMTIDTPFSLRQYKGGSLPSLADDEPEAGSLVSDE
VDAPSSPVPSSLGSTLNTSQGKQTSISSSHNLLDDPVPTNVTSKPSLLVPINTTQSSRTS
TIFSNPPLEANSSSKPITKSSNFVSPVPAPRQFQSQPSLHKPVSAATKQPIAPQVSASLP
RSYQKSDSARITSVVTPRPFGAPSTKITSLPRAYTVDDSRKRFNGETNSSKQTTVPSRYA
PFVKEDEVNSQTSSVQSSSEDTGEEEEQVVPPPQTSSSVTPVSRVAPQPKAVSLLNSSQQ
ENYSEMRISLNQKPKSSHDFGFQTNWDSMGAVVKSLQPGSQAELCHLQVGDQILAVNGQK
VADMSYEQWKRNMDEALQQGSLFMDIRRQGKNNWGKDLPSLSYKSHKVINLTSADPLGSP
EPNANMSLDFTSRPAMDPTVKSLNVRSQPVNSLPSNGINGGTNEEPVILRNKEPISLKNL
KRRSEFFEQGGSENQIPDLPVPSLSASSTRWSWDPEEERRRQEKWQKEQERQLQEKYRRD
QEKLEEEFRKAQQEAVTEGTKQYQEELRSLELEKEASRLALKEEEERRRREEERKRKEEQ
EHLEEERKIKEDLERLEEDRKRREEQKKRIEQKRLEEQRKKEEEEHKQWEEENRRREEDA
QRLQRKREEDEERRRQEAHQRLQAKAKSKSTPELDDNDKNDIKGVYSKHRGLAGWLLEEE
LRRKKDPHILRHQAASELELERRNILSAMRYSNPERAVSSGLGESALYKSSQNKKEPLSQ
AEAERQQIIQDMKKKTSLLTDNSWIRESAVDNTNKQPNSLPMRRGESLDNLDMTTNRPSW
RSSWTPGTTSSIPDYSRPYSSLTDSSIQSGRPGAATVPSYQSLSSHRPSLPNSTSSTRTN
PENQPSSQNRSVSGKKMCTNCDMPLGKGAAMIIESLGLCYHLQCFKCIQCKKDLGGKESG
AEVRIRNKQLFCNSCYIQVKTGQPTSM
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagaaagcaaggagtatcgccgttcgctggtggtcactccaaaggccaacact
cagttcaaccagttcctgccaagcaaagaaaagcagacgggctacgttccagcaccacta
cgcaagaagcgctctgactatcgcactgatgaaaacagacgcagctgggccagtcccatg
tttacagaggaggatggatctttctctcggataggcacaggctcgtcctccatcaatgaa
ctaggcactcaaagttctacacaagttgcctggccgttcgggtatgagagcagtgattca
gaggcagaccgtccagaccctgacctcctccttgatgatttggccagccgccggtttcac
accccatctgtcatcactcccaccaactttgcattacccatgacctcaggggattccacc
actatgccccaaaccaccaggccaaaggttatgcttactaatgtgccccgaccaacgttg
acctatctcagcagtgaaactagacctcctcagaaggctgctaggaggtctgcatctgct
gatgtctacatgtatgatgactcggcggaagaagatgatgagattggttatgctgatcct
gttcaggatgacctttatgctcgtaaagtgggcctgacagtatcccagcccatttccact
gtacaccatgataaatttctcccaaagttctggacaccagaggaagacatacatgtgcag
aaaatcagactgggctctcagcgtcggccctggtacagaaagatccagggtttcagtcag
aagaagtctggctcatcctcagaggactccgactgtgatgtcagtccccggcactgtgtg
tcctctccctctcattctgaacccacttccttacacgcacaaacttcacagctcagtccc
atcactcccagtcctaccacacagccactcatgctcatgcaacagacttctggagcccaa
aggtttcagctccctgatttctggcccaggccagaccccacctcaggtccaagacttatt
aagtgcaagagacacccattattagggcgggagcaccctaacgacccctacaatgtttct
gaggacattctccctgacttggacaatgatgacatgtttagccgccgcacatgtgccttc
aactctaacactgagctggccaggatgaaatatgggggtctacttacctcacatcacagg
tctgagccatctatcagagtggttactcagcacaacgatggcaaatctacttaccctgac
attgagaaagacgatgtgctcacccgccggttacagcatcattctacgctgcaccctctt
tcaggagcacctaataactatcatcctgtgcctattcctgagtcctgggccctgccacag
aaacttcaggccaagatatctgccccatgcccaccaatacaggtggctgcccaggtgtgt
gcaaaacagaagggggatgcacaccgaaaaacagatgatatgctagttaggaagtttgga
attgtacatgtccagaatcccactgaggtatctcagaggtcatttggaactcaaacaggc
ccaagtgtgccctcatcctgcagcgaggaggatctccaaaaatggcatgccatcagagag
gccagtcgcctaagatataagaagaggctgatggtggagagactcatgcaaaagaactca
gagactgatgggtctgtttcattgagtgatatccctgttgagcaggcagtccaaagtgta
cgctatgaggagctgaagaagttccgtgagaatttgaaggaaagtgaagacaagtggcag
gatgatctcaataaatggaaaagcaggcgcaggagtgttaactcggatatcatgaagaag
aaagaagagcgagaacagatcgagacacttactataggaagcagcacgaggaaatcaaag
accttcaaggaaatggaagaggagagggaaagccaaacaccgggcttcaggagtcgcttt
gcaaccttctccacttctgaagaccaggatgtctttgatgaaccaacacccaagaccagg
gttttaccaagccgcagcatgaccattgatactcccttctccctgaggcaatataaaggg
ggctctctgcccagtttggcagatgatgaacctgaggctggcagcctggtatccgatgag
gtagatgctccatctagtcctgtcccatccagcttagggagcactctaaatacaagtcaa
ggaaaacaaactagcatctccagcagccacaaccttctggatgatccagttccaaccaat
gtcaccagcaaacccagtctactagtgcccatcaacaccactcagtcaagtcgcaccagc
accatcttcagcaatcctccactggaagccaacagcagctcaaaaccaattacaaaatcc
agcaactttgttagccctgtgcctgcacctaggcaattccaaagccagccttcactgcat
aaaccggtctcagcagcaaccaaacaacccattgcacctcaggtttctgcctcacttccc
aggagctaccagaaatcagatagtgcacggatcacttctgtcgtcactcccagacctttt
ggtgccccaagcaccaaaattacctccttgccacgtgcctatacggtggatgactctcgg
aagcgctttaatggtgagacaaacagtagtaagcaaactacagttcctagccgttatgca
ccatttgttaaagaagatgaggttaattcccagaccagttctgttcaaagcagtagtgag
gatacaggggaggaagaggagcaagtggttccccctcctcagacttcctcatctgtcact
ccagtcagccgtgtagccccacaacccaaagcagtgtctcttttaaatagctcacagcag
gaaaactacagtgaaatgaggatcagcctgaaccagaaacccaagagcagtcatgacttt
ggcttccagactaactgggactccatgggggctgttgttaaatctttacaaccaggtagt
caagcagagctgtgccacctgcaggtcggggatcagatcttggcagttaatgggcagaag
gtggcagacatgagctacgagcagtggaaaaggaacatggatgaagccctgcagcagggt
agcctgtttatggacattcgcagacagggaaagaacaattggggcaaagacctaccttcc
ctatcatataaaagccataaggtcatcaatctcaccagtgcggatcctctaggttcccct
gagccaaatgccaacatgagcttggacttcacctcacgcccagccatggatcccactgtg
aaatctctgaatgtccgctcccagcctgtcaatagtctgccttccaatggcattaatggt
ggaactaatgaggaacctgtgattctgagaaacaaagaacccatttctttaaaaaacctt
aaaaggagatcggagttttttgaacaaggtggatctgaaaatcaaataccagatctacca
gttccctctctgtcagcctcctctactcgctggtcctgggacccagaggaagagcgcagg
cgacaggagaaatggcaaaaagagcaagagcgccagctccaggaaaagtatcgacgagat
caagaaaagctagaggaggagtttagaaaagcccagcaagaggctgtaacagaaggcaca
aaacaatatcaagaggagttgaggagccttgagctggagaaggaggcttcaagactggcc
ctcaaagaggaggaggagaggaggaggagagaggaggagaggaaaagaaaggaggaacaa
gagcaccttgaggaggagaggaaaataaaggaggacctggagcgccttgaggaggacagg
aaaagaagggaagagcagaaaaagaggatagaacagaaacgcctggaagagcagagaaag
aaggaggaagaggagcataaacaatgggaggaggaaaaccgaaggagagaggaagatgca
cagagactgcagaggaaaagagaggaagatgaggagaggaggcgccaagaggcccatcaa
agacttcaggcaaaggccaagtccaaatctactccagagctggatgacaatgacaaaaat
gatattaaaggtgtgtatagcaagcacaggggcctggcaggttggcttctggaggaagag
ttacgaaggaagaaagatcctcatatcctgagacatcaggctgcatctgagctggaacta
gagaggagaaacatccttagtgctatgagatacagtaacccagagagagccgtaagcagt
ggtctgggtgagagcgctctgtataagtccagccagaataagaaagaaccattatctcaa
gctgaagcggaacggcagcagatcattcaggacatgaagaagaagacttcattgctgaca
gacaacagctggatccgtgaaagtgcagtcgacaatacaaacaaacagccaaacagcctt
cccatgaggagaggtgagtctctggacaacctggacatgacgacaaaccggccttcctgg
aggtcatcatggactccaggcaccacttcctccattccagactatagccgtccttattca
tctcttactgattcttcaatccaaagtggacgtccaggtgctgccacagtgccttcatat
caatctctgagctcccataggccatcattgcccaattccacatccagcactcgcacaaat
cctgagaatcagccatcctcacaaaacaggtcagtcagtggcaagaaaatgtgtactaac
tgtgatatgccactgggcaaaggagcagcaatgatcatcgagtccttggggctctgttat
catttacaatgctttaagtgcattcaatgcaaaaaagatcttggcggcaaagaaagtggt
gctgaagtcaggatacgaaacaaacagctcttctgtaactcctgctatatccaagtcaaa
acagggcagcccacttccatgtga
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