Ictalurus punctatus (channel catfish): 108266642
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Entry
108266642 CDS
T04658
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108266642 (col18a1a)
00535 Proteoglycans [BR:
ipu00535
]
108266642 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108266642 (col18a1a)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108266642 (col18a1a)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108266642 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108266642 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
108266642
NCBI-ProteinID:
XP_017325727
Ensembl:
ENSIPUG00000006142
UniProt:
A0A2D0R542
LinkDB
All DBs
Position
6:complement(30789017..30876756)
Genome browser
AA seq
1632 aa
AA seq
DB search
MLNKMSSLGLWLGVLVGLCIGHSHGWFWYDDSKDNSESTPTPAYVTTLGTTLPTTVPTSK
PLRTEGTDASGVDVLAKGEEMGSGGGSRVGSALNEQSKPEVEHGSVLNADSGSGSLSVSV
SGVDPESGPTLKPANGSPLWENQEVNNVQANLSIGMDNNRVLAADTELEKNLTKVDLSQM
DEDRGNVSASPDDLITTVSLSQLIGYPLPEGVTKSYDPDSSGFVFDQNSKTGQLARAHLP
TSFFRDFSLLFNVKPTSTKAGVIFSITDTNQKIMYVGVKLSAVENGKQKIVLFYTEPDSQ
ASYEAASFTVPSLVNYWARFSISVMDDKVTLYPSCDSEPKVLPFERSPDEMELESGAGIF
VGQAGGADDDKFVGIIGDLKVVGDPHEAERYCEEEEDDSDGASGDYGSGDYKNKHTASTT
SQPSNPLQQPPVKPTVVTVSKDVPKGSVDGYGRISGSYPDSHRMSGSHGNSGRSSGTNDY
SSGTYDNSHRTFGSYDNSQPTSDTHDDSWHTSDSAAGTRTSVLNQDNKRTSDRTADSGRI
SSSGKVTGLSESSRHTYTVSTGGRGVSGSSAERGKSVELRPGTSSSQVLAAAGAKGEKGE
RGPKGDRGPAGPKGEAGSMTGSGGGAKGEKGSLGEKGMKGAAGFGYPGVKGDQGPPGPQG
PPGPPGPSADVVERGDGSVVVQGPRGPPGPAGPAGPEGEPGDPGEDGSAGPAGPRGFPGT
PGDPGAKGEKGDRGESVPGPRGPPGLPGPPGPPSRSDSPTFLDMEGSGFGDLEGVRGLPG
IPGPPGPPGPPGPPGPVGLTNVSHATVSGVSGPSGPPGKDGAPGQPGLPGLPGTEGKPGL
PGPKGEKGDTGELGLPGVVGEKGAQGLPGYPGAPGQTGLAGLPGPMGPVGPPGPPGPSYH
AGFDDMEGSGVNFFGGVPGVRGPEGKQGPPGLPGQPGIPGQKGEKGSEGLPGISGHPGLD
GFPGPQGAQGERGFKGERGDPGRDGVGHPGLPGPPGPPGQIIYRSADGSGIPGQAGFPGP
MGPKGERGDPGAPGNGIKGEKGEPGVVIGPDGSPLFLGATAGQKGERGPAGSVGPPGPYG
PPGMKGEIGMPGRPGRPGILGSKGEKGESGSGYSYPGPPGPPGPPGPPGPLAYPSAVDRF
GRYEDSRTVYPGAKGEKGDRGVPGLPGTPGNFDIYTLKNELKGERGDTGLKGEKGEPGVQ
YGSHYGGVQGPPGPPGPRGDSIRGPPGPQGPPGPQGVGYDGRPGNPGPPGPPGPPGSPSL
PGAHRPTVSIPGPPGPPGPPGLPGQNAGVTILRTFDLMLATAQRQPEGALIYIMDKSDLY
VRVRDGVRQVMLGTYNPFYRDSHNEVAAVQPPPVVQYSQSHSANNGAEHYSHVDSPIRQP
DSHGSEHSQPAIDPQYNTHYSSHPDTRYPPHPDYRFPARTDRPYIPVQPERYPIPPVLRP
STPIHQPEDHVHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAAGLKGTFRAFLSS
KLQDLYSIVRKSDRNTLPIVNLKDQVLFSSWESLFGDSEGRLKTSIPIYSFDGRDILRDS
AWPEKMIWHGSSGKGHRQMDNYCETWRTSDLAVMGLASSLQAGQILQQKPSSCSNNFIVL
CIENSYITQSKK
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgtcttcgcttggactgtggcttggtgtgctggtgggcctgtgcatc
gggcactcacatggatggttttggtatgatgactcaaaggacaacagcgagagcactcca
acaccagcctatgtgactactttaggcacaactcttccaacaacagtacctacaagtaaa
cccttgaggacagaaggcacagatgcttccggtgtggatgtccttgcaaagggtgaggag
atggggagtggagggggatctagagttggttcagccttgaatgagcagtcaaagcctgag
gtagaacatggttctgtgttaaatgctgactctggatctggatcattgtctgtttctgtg
tctggcgttgaccctgaatctgggcctacacttaaacctgccaatgggtcccctctgtgg
gaaaatcaggaagtcaacaatgttcaagccaatttatctattggtatggataataaccgt
gttcttgcggcggatactgagctggagaagaatctgaccaaagtggatctctctcaaatg
gatgaagaccgtggaaatgtttctgcttcaccagatgacctcattacgacagtttcgctc
tcacagctgattggttaccctcttcctgaaggcgtcaccaaaagttatgacccagactct
tcaggctttgtgttcgatcagaactccaagaccggtcagctggcccgtgcgcacctgccc
acatcttttttccgtgacttctccctcctgttcaacgtgaagcccacttccaccaaagct
ggagtcatcttctcaatcactgacaccaaccagaaaatcatgtatgtgggggtgaagctt
tcagccgtggagaacggaaagcaaaaaattgtcctgttctacactgagccagactcccag
gcatcctatgaggctgcaagcttcactgttccctcccttgtcaactactgggctcgtttc
tctatcagtgtgatggatgataaagtcaccctgtaccccagttgtgactccgagcccaag
gtgctcccctttgagcgttctccagatgaaatggagttggaatcaggagccgggatcttt
gtgggtcaagctggaggagctgatgatgataagtttgtgggtattattggagatttgaag
gtggttggagacccccatgaggctgaacggtattgtgaggaagaagaggatgattccgat
ggagcctcgggtgattatggaagcggtgattacaaaaacaagcacacagcctcgaccaca
agtcaaccttccaatcccctacagcagccaccagtaaaacctactgtggtaacagtgagc
aaggacgtgcccaaaggctcagttgatggctatggacgaatttctggctcatatcctgat
tctcatcgaatgtctggctcacacggtaattctggacgatcatctggcacaaatgactat
tcttctggcacttatgacaattcacaccgaacatttggctcatatgacaattctcaacca
acatctgacacacatgatgattcctggcatacatctgactcagccgctggcacacggact
tcagttttgaaccaagataacaagcgaacctcagaccgaactgccgattcagggcgaatt
tcaagctctgggaaggtaacaggtttgtctgaaagctcccgacatacatatactgtgagt
accggtggccgaggagtttctggctccagtgctgagagaggcaagtctgtggagctcagg
cctgggacttccagctcccaagtgctagcagctgcaggagcaaaaggtgagaaaggagag
agaggacccaaaggagaccgtggtcctgcggggcccaagggggaggcagggtccatgacc
ggatctggaggaggtgccaaaggagagaaaggcagcctaggagaaaagggaatgaagggt
gctgcaggatttggctatcctggggtaaagggtgatcaaggacctcctggtccacaaggt
cctcctggtcctcccgggcccagtgctgacgttgtggagaggggagacggctcggtagta
gtacaaggaccaagaggacctccagggccagcggggcctgccgggcctgaaggagaacct
ggtgaccctggtgaagatggaagtgctggaccagccggaccacgcggtttcccaggaacc
cctggagatcctggagctaaaggagaaaaaggtgaccgtggtgaaagtgttcccggaccc
aggggaccaccaggacttccaggacctccaggacctccctctcgctcagacagccctacg
tttttggacatggagggctctggctttggtgatctagagggtgtacggggactgcctggt
attcctggtcctcctggtccacctggcccacccggacccccaggacctgtaggtctcact
aatgtttcacatgctactgtttctggtgtgtctggaccttctggtccacctggaaaggac
ggcgctccaggacaaccgggacttccaggcctccctggtactgagggaaaacccggcctg
cctggccctaaaggagagaagggtgataccggcgagctcggcttacctggagttgtggga
gaaaagggtgcacaggggcttcctggttatccaggagcacccggacagactggcctcgct
ggccttccaggaccaatgggacctgtgggaccacctgggcctccagggccgagctaccat
gctggatttgacgacatggagggttcaggtgtaaactttttcggtggcgtgcctggagtc
agaggacctgaaggcaaacagggtccacctggtctaccaggtcagcctggtatacctggg
cagaaaggagagaaaggcagcgaggggcttccgggaatatctggccatcctggacttgat
ggatttcctggaccacagggagcgcagggagagcgtggatttaaaggagaaagaggtgat
ccaggtcgtgatggtgttggccatccaggccttccaggaccacctggacctccaggacaa
attatctatcggtctgcagatggttctggcatccctggtcaagcaggattcccaggacca
atgggaccgaagggtgagagaggagacccaggtgctccaggaaatggcattaagggtgag
aaaggggaacctggtgtggttattggacctgatggaagtcctctatttcttggtgcgaca
gctgggcaaaaaggggagaggggacctgctggatcagttggacctcctggaccatatggt
cctcccggcatgaagggtgagatcggaatgccaggcaggcctggtcggccaggtatactt
ggaagtaaaggagaaaaaggagagtcgggctcaggatacagttatcctggtccacctggg
cctccaggtcctccaggtcccccgggacccctagcatacccttcagctgtggacagattt
ggtagatatgaagactctagaacagtgtacccaggtgcgaaaggagagaagggagaccgt
ggggtccctggtcttcctgggacaccaggcaactttgacatttacactctgaagaacgag
ctgaagggtgagcgtggagacacaggactgaaaggagagaagggtgagccaggtgtacag
tacggttctcactacggaggcgtgcagggaccaccaggacctcctggtcctcgtggagat
tcaatcagagggcctcctggtccacagggtccaccaggacctcagggtgttggttatgat
ggccgtccaggaaacccaggaccaccaggacctcccgggccacctggttcaccctcatta
cctggcgcccacagacctacagtcagcattcctggccctcctggtcctcctggtccacct
gggttgcctggccagaatgctggagtgacaatactgagaacgtttgacttaatgctcgca
acagcacagagacaaccagagggtgctctcatctacataatggacaaaagcgatctctat
gtcagagtgcgtgatggcgtcagacaagtcatgcttgggacttataaccccttctacaga
gattcacacaatgaggtggcagcggtacagcctcccccagtagtgcaatactcacagagc
cactcagcaaataatggagcagagcattactcccatgttgactctccaatccggcagcca
gatagccacgggagcgagcattctcagccagccattgatccacagtacaacacacactac
tcctcacacccagacaccaggtacccacctcaccctgactacagatttccggcacgcact
gatcgaccgtacatccctgtacagccagagaggtatcccatccccccagtcctcagaccc
agcacacccatccatcagcctgaggatcatgtacacacatcgggaccagggctgcatctg
atcgccctgaacagccctcaggtggggaacatgaggggcatccgtggcgcagacttcctg
tgcttccagcaggcacgcgctgccggcctgaagggaacatttagggctttcctgtcctcc
aaactgcaggatctctatagcatcgttcgcaaatctgacagaaacacactgcccattgtc
aacctcaaggaccaagtgctgttcagcagctgggaatcgctgttcggtgattcagagggc
aggttgaagaccagcatacccatatattcatttgatggcagagatatcctcagggacagt
gcttggccagagaagatgatctggcatggctccagtggtaagggtcaccgtcaaatggat
aactactgtgagacgtggaggacgtcggatctcgccgtgatgggtctggcctcatctctg
caggctggccagatcctacagcagaaacccagcagctgctccaacaacttcatagtgctg
tgtatcgagaacagctacatcacacagtctaagaagtaa
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integrated database retrieval system
