Ictalurus punctatus (channel catfish): 108266819
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Entry
108266819 CDS
T04658
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108266819 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108266819 (u2af2a)
Spliceosome [BR:
ipu03041
]
Complex A
U2 snRNP components
U2 related factors
108266819 (u2af2a)
Complex B
108266819 (u2af2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Transformer
RRM_7
Motif
Other DBs
NCBI-GeneID:
108266819
NCBI-ProteinID:
XP_017326081
Ensembl:
ENSIPUG00000007717
UniProt:
A0A2D0R7Q3
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All DBs
Position
1:12007358..12024239
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AA seq
464 aa
AA seq
DB search
MSDFDEFERQLTENKQAADRDKENKQHRRSSSRSRSRERDRKRRSRDRERRGSRDHHGDT
KERRHRRSRSPHREKKKAKVKKYWDVPPPGFEHVTPVQYKAMQAAGQIPATALLPTMTSE
GLAVTPSPVPVVGSQMTRQARRLYVGNIPFGMTEESMMDFFNAQMRLGGLTQALGNPVLA
VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPG
VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATCLSKGYAFCEYV
DVNISDQAIAGLNGMQLGDKKLLVQRASVGSKNTTLPGINQTPVTLQVPGLMNSSMNQMG
GIPTEVLCLMNMVSPEELLDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLEVPGTGK
IFVEFMSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHSRDFW
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattttgacgaattcgagcggcagctaacggagaacaagcaagcagctgaccga
gataaagagaacaagcagcaccggaggagcagctccaggagccggagcagagagagggac
aggaaaaggaggagcagggaccgagagagacgaggaagccgagaccaccatggggacacc
aaggaacgcagacacaggcggagtcggtctccacaccgtgagaaaaagaaggccaaagtg
aaaaagtactgggacgttcctcctcctggcttcgaacacgtcacacccgtgcagtacaaa
gccatgcaagctgctggccagattcctgcaactgccttgctccctacaatgacctctgag
ggtctggctgtgactccgagtcctgtgcctgttgtgggcagccagatgacgcgtcaagct
cggcggctctacgtaggcaacatcccgttcggcatgactgaggagtccatgatggacttt
tttaacgcccagatgaggttgggtggcctgactcaggctctgggaaacccagttcttgct
gtgcagatcaaccaggacaagaactttgccttcctagagttccgctcggtggatgagaca
acgcaggccatggcgtttgatggcatcattttccagggacagagtctgaagatccgccga
ccgcacgattatcagccactgccaggcatgagcgagaacccaagtgtttatgttccaggc
gtcgtttccaccgtagtgcctgactcggctcataagctcttcatcggcggacttcctaat
tatctcaacgacgaccaggtgaaggagttgttgacttcctttggtcctctgaaagccttt
aacctggtgaaggacagcgccacttgtctctcgaaaggctacgccttctgtgaatacgtt
gacgtcaatatcagcgatcaggctatcgctgggctcaatggcatgcagctaggggacaag
aaactcctagtccagagagccagtgtcggatccaagaacactacactgcctgggatcaac
cagacaccagtgacgctgcaggtgcctggcctgatgaacagctccatgaaccagatgggc
ggcatccccaccgaggtgctgtgtctgatgaacatggtgtcccccgaggagctgctggat
gacgaggaatacgaggagatcgtagaagacgtccgggatgagtgcagcaaatacggccaa
gtgaagagtatcgagatcccgcggcctgtagacggcctcgaggtgcctggtactggcaag
atcttcgtggagttcatgtctgtgtatgactctcagaaagccatgcaaggcttaacaggt
aggaaatttgccaacagagtggtggtgaccaaatattgcgatcctgacgcctaccacagc
cgagacttttggtag
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integrated database retrieval system
