Ictalurus punctatus (channel catfish): 108266899
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Entry
108266899 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35
KO
K12012
tripartite motif-containing protein 35
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108266899
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108266899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-B_box
zf-RING_UBOX
U-box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_10
zf-Nse
JetA
Prok-RING_4
Perilipin
DUF4200
HisK-N-like
Motif
Other DBs
NCBI-GeneID:
108266899
NCBI-ProteinID:
XP_053531116
Ensembl:
ENSIPUG00000014720
UniProt:
A0A9F7R6X8
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All DBs
Position
24:1494865..1498726
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AA seq
470 aa
AA seq
DB search
MASKFSEEEFSCPVCCEIFTDPVLLRCSHSVCKVCLQKFWETKGSRECPVCRRKSSMEEP
PRNLALKNLCETFLQERSQRSSSASETVCSLHSEKLKLFCLDDQQPVCVVCRDSKIHTNH
KFCPIDEALTDCKEELKTALKPLQEKLKIFKDCKLNWSQTAEHIKIQAQRTERQIKEEFE
KLHQVLRDEEAARIAALREEEEQKSQTMKEKIEKLSRDISSLSDTIRGVEEEMRAEDVSF
LQNYEATVRRAQCTLQHPEELSGTLIHVAKHLDNLKFRVWEKMQDAVQYTPVTLDPNTAH
PLLIVSDDLTSVRLSGEKQKLPDNPERFDDRWCILGSEVFNSGTHCWDVEVGDCTWWLVG
VMTESAQRKGNIFSRSGIWYVWYFGGKYRTRSTTQPVTLLSVTQNLQRIRVQLDWNRGKL
SFSDPLTNTHIHTFTHTFTDKLLPFINVGCNKSPVKLLPLQCSVRVNQIS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaagttttcagaggaggagttctcttgtcctgtgtgctgtgaaatcttcacg
gatcctgttctcctgcgctgcagtcacagtgtgtgtaaagtgtgtttgcagaagttctgg
gagaccaaaggatccagagaatgtcctgtttgtaggaggaagtcgtctatggaggagcct
cccagaaatctggccttaaagaacctgtgtgagactttcttacaggagagaagtcagaga
tcttcatcagcgtctgaaacagtctgcagtctgcacagtgagaaactcaaactcttctgt
ctggatgatcaacagccggtgtgtgtggtgtgtcgggattcaaaaatacacaccaaccat
aaattctgccccattgatgaggcattaacagactgtaaggaggagctgaaaactgctctg
aagcccctacaggagaaactgaagatctttaaagactgtaaactgaactggagtcagact
gcagaacatataaagattcaggcccaacgcacagagcggcagattaaggaggagtttgag
aagcttcaccaggttctacgagatgaagaggcagccaggatagctgcactgagagaggaa
gaggagcagaagagtcagacgatgaaggagaagattgagaagctgagcagagacatatca
tctctttcagacacaatcagaggcgtagaagaggagatgagagccgaagacgtctcgttc
ttacaaaactacgaggccacagtgagaagagctcagtgcactctgcagcatccagaggag
ctttcaggaacactgatccatgtggcaaaacatctggacaacctgaagttcagagtctgg
gagaagatgcaggacgcggtccaatacacacctgtaactctggaccccaacactgctcac
cctctcctcattgtatctgatgatctgaccagtgtgagactcagtggtgagaaacagaag
cttcctgataatccagagagatttgatgatcgttggtgtatcctgggctctgaggtcttt
aactcagggacacactgctgggacgttgaagtaggagactgtacatggtggttagtgggt
gtgatgacagaatctgctcagaggaagggaaatatattctccagaagtggaatctggtat
gtgtggtattttggtggtaaatatagaacacgttctacaacacagccagtcactctcctc
tcagtaacacagaatctccagaggatcagagtgcagctggactggaacagaggaaagctg
tcgttctctgaccctctcactaacacacacatacacactttcacacacacatttactgat
aaattactgccatttataaatgttggttgtaataaatctcctgtaaagctcctcccactt
cagtgctctgtaagagtgaatcagatcagttag
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