Ictalurus punctatus (channel catfish): 108266902
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Entry
108266902 CDS
T04658
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108266902
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ipu04050
]
108266902
Cytokine receptors [BR:
ipu04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
108266902
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Ortholog
Paralog
GFIT
Motif
Pfam:
Death_EDAR
TNFR_c6
Motif
Other DBs
NCBI-GeneID:
108266902
NCBI-ProteinID:
XP_017326217
Ensembl:
ENSIPUG00000015837
UniProt:
A0A2D0R6J5
LinkDB
All DBs
Position
6:complement(264226..297969)
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AA seq
463 aa
AA seq
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MARKIPRVESCLLSFLLASSVYPLRAEYSSCGENEFYNHSSSSCRPCPQCQPGQEPYMNC
GYGVKDEDYDCVSCPPGKFSRGKYEICRRHKDCNALYKATVLTPGTRESDAECGACLPGY
FILENRLRNIYSMMCHSCQNAPRNTKECMRTTSTSTKHVPGIPSTSTTTFPHAQKDPTGQ
GHLATALIIAMSTIFIMAIAIVMIIMFYILKAKTSGQACCSGQIVKTIEAPMNKQEEKKE
AQENAVIFTEKDEFKPPPTKAVKSENDASSENEQLLSRSIDSDEEAAQEKQGATDLCLLS
LVHLTRDKTCSNNTVSTTVNNNNNNCSNNSRTMGIHSRRKKILELYAKACGVAEGVSPVE
LPFDCLERTSRMLSTTYSAEKALVRTWRHLAESFGLKRDEIGGMTDGMQLFDRVSTAGYS
IPDLLARLVQIERLDVVEALCFDILGAPPSGQHLTISSRCASV
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcccggaaaataccaagggtcgaatcttgtctcctttcatttctattggcctccagt
gtgtatcctctgagggccgaatactccagctgtggagaaaatgagttttataaccacagc
agcagcagctgtcggccgtgtccacagtgccaaccgggacaggaaccatacatgaactgc
ggctacggtgttaaggatgaagactatgactgtgtgtcgtgtcctccggggaaattctcc
aggggaaaatatgagatctgtcgtcgtcataaagactgtaacgcactgtacaaagccacg
gtgctgacgccgggtacgagggagagcgacgccgagtgtggagcctgtttacccgggtac
ttcatcttggaaaatcgtctgagaaacatctacagcatgatgtgtcattcctgtcagaac
gctccacgcaacaccaaagagtgtatgcgaacgacatccacttccacgaagcatgtcccg
ggaataccgtccaccagcaccaccacgttccctcatgcccaaaaagatccaacagggcag
ggtcacctagcaacagccctcatcatcgccatgtcaaccatcttcatcatggccatcgcc
atagtgatgatcatcatgttttacatcctgaaagctaagacgagcggccaagcatgctgt
tccggtcagattgtgaagaccatagaagctccgatgaacaagcaggaggagaagaaagaa
gctcaagagaatgctgtaatattcacagagaaggacgagttcaagcctcctccaacaaaa
gcagtaaaaagtgaaaacgacgcgtcgtccgagaacgagcagctgctgagccgcagcatc
gacagcgatgaagaagcggcgcaggagaaacaaggagccaccgatctgtgccttttatca
ctcgttcatctcacccgagacaagacctgctcaaacaacaccgtcagcaccaccgtcaac
aacaacaacaacaactgcagcaacaacagcagaactatggggattcacagtcggaggaaa
aaaatcctggagttgtacgccaaagcgtgtggtgttgccgagggtgtgagtccggtcgag
ttgccctttgactgcctggagcgaacgagccgcatgctgagcaccacctacagcgcggag
aaggcgttagtcaggacgtggcgtcacctggccgagagcttcggattaaaacgggacgaa
atcggaggaatgacagacggcatgcagctcttcgaccgtgtcagcacggctggctacagc
atcccggacctgctagctcgactcgtccagatcgagaggttggatgtggtcgaagcacta
tgcttcgatattctcggagcgcccccttctggccaacatctgacgatttcttcacgttgc
gctagcgtttga
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