Ictalurus punctatus (channel catfish): 108266976
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Entry
108266976 CDS
T04658
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108266976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108266976
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
108266976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
Peptidase_M57
Motif
Other DBs
NCBI-GeneID:
108266976
NCBI-ProteinID:
XP_017326309
Ensembl:
ENSIPUG00000006528
UniProt:
A0A2D0R6U8
LinkDB
All DBs
Position
6:30468483..30485146
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AA seq
726 aa
AA seq
DB search
MARAAKTAVVLCMDVGFSMSNSAPGEEAPFEQAKKIIQKFIQRQVFAENKNELGLVLFGT
DDTKNPLALDDQYQNICIHRHLMMADFDLLEEIEHNLLPGGQHADWLDALVVCMDLLQKE
TMGKKYEKLNIAVLTNLNTPACADQLDIIIGNLKKAGITLQFFLPFPVDADEGAAGDGDR
PGPRPPTQLGKGLSREQKKGLEMVRQVMTSLDEEDGLDEVYTFSDAVEKLSMFKRTERRP
TGWSCLLTIGSSLSIRIIGYKTVCEEKIKKTWAIVDAESHQKDDVKRDTVYCLNDDNETE
VQKDDVIQGFRYGSDIVPFSKVDQEQMKYKCDGKSFAVLGFTKKELIHRHHFMGQQILKV
FAAKDDEHAAVALSALIQALDSLKMVAIVRYIYDRRCNPQVGAAFPCVKDKYECLVYVQL
PYMEDLRQFAFPSLENNKKFVPSEAQLSAVDNLINSMMLVEEGEDGEKEDIFKVNKIPNP
QFQRLFQCLHHRGVNPGAPLPPMEPWLKRMLDRPQAVSARCRAPLQEMKKLFSLKEVVQK
KGQKTSADVFGNSTEEPDAKKFKMDEGEKFSLAETSEGNITSVGSVNPAENFRTLVQKKT
IPFDQACEQLTHRMEQLLGNRSTDYYMKTITCVQAFREQSIKVSNAELFNSYMQSLKNSV
PEKNLQAFWDLLVADSITLISKDEVDSSTVSKQEANQFLAFEEKEEVAVAPSHEDAGDVD
DLLDMM
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagcagccaagacagctgtggtgctttgcatggatgtgggcttctctatgagt
aactcagcccctggcgaggaagccccattcgagcaagctaagaagatcattcagaaattc
atccagcgccaggtctttgctgaaaacaaaaatgagttgggcctggttctatttggaacg
gatgacaccaagaatccacttgctctagacgaccagtaccagaacatctgcatacaccga
catttgatgatggccgacttcgacctgctggaggaaattgaacataatcttcttcctggt
ggtcagcatgctgactggcttgatgctcttgttgtatgcatggatcttctacaaaaggaa
accatggggaaaaagtatgagaagctgaatatcgccgtgctcactaacctcaacacgccg
gcctgcgcagatcagctggacatcattatcggcaatttaaagaaagctggcattaccctg
cagttctttctgccattccctgtggatgcagatgaaggggctgctggagacggagacaga
ccaggtccgaggcctccgacccagcttggaaaaggcctgagcagggagcagaagaagggg
ctggagatggtcaggcaggtcatgacctctctggatgaagaagatggcctggacgaagtc
tacactttcagcgatgctgtggagaagctgtccatgtttaagcgaacggagagacggccg
acggggtggtcctgtctgcttactattggaagctccctgtccatccgcatcatcggatac
aaaacggtgtgtgaggagaagattaagaagacctgggccatagtagatgctgagagtcac
cagaaagatgacgtaaagagggacacagtctactgcctcaacgatgacaatgagactgaa
gtgcagaaagatgatgtcattcagggtttccgttacgggagtgacattgtcccgttctcc
aaagtggaccaagagcagatgaagtacaagtgcgatggaaaaagctttgctgtgcttggc
tttaccaagaaggagctgattcatcgccatcatttcatgggccagcagattcttaaggtt
tttgctgctaaagatgatgagcatgcagctgttgcgctctccgctctgattcaagctctg
gacagtctgaagatggtggctattgttcgttatatttatgaccgccgctgcaacccacaa
gtaggagcagcttttccttgcgtcaaagacaaatacgagtgcttggtgtatgtgcagtta
ccgtacatggaggacctccgtcagttcgctttcccttcactggagaacaacaagaaattt
gttccatcagaggctcagctgtcagcagtggacaatctcatcaactctatgatgctggtg
gaggagggtgaagatggagagaaggaggatatattcaaagtcaacaaaatccccaaccca
caatttcagagactcttccagtgcctacaccatcgtggggtgaacccaggtgcacccctg
ccccctatggagccgtggctcaagcggatgctggatcggccccaggctgtctctgcccgc
tgccgtgcacctctgcaggagatgaagaaactcttcagcctgaaggaggtggtgcaaaag
aagggccagaagaccagtgcggatgtgtttgggaatagcactgaagagccagacgcaaag
aagttcaaaatggatgaaggggagaagttcagcctagcagagacttcagagggaaacatt
acctctgtaggtagcgtgaaccctgcagaaaacttccgcactttggttcaaaagaagacc
attccctttgaccaagcatgcgagcagctcacccacaggatggagcagttgctgggcaac
aggagcaccgactattacatgaagaccatcacatgtgtccaggcctttagggagcagtcc
attaaggtatcaaatgcggagcttttcaacagctacatgcagtctctgaagaacagcgtt
ccagagaagaatcttcaggcattctgggacctgctcgttgcagattctataacactaatc
agcaaggatgaagtggatagcagcacagtatccaagcaagaggcaaaccagtttctggca
tttgaagagaaagaagaagtggcagtcgctccctcccacgaggacgcaggagacgtggat
gatttgctggacatgatgtga
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