Ictalurus punctatus (channel catfish): 108267002
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Entry
108267002 CDS
T04658
Name
(RefSeq) AF4/FMR2 family member 3
KO
K15195
AF4/FMR2 family member 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108267002
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108267002
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AFF4_CHD
AF-4
AF4_int
Motif
Other DBs
NCBI-GeneID:
108267002
NCBI-ProteinID:
XP_017326352
Ensembl:
ENSIPUG00000004129
UniProt:
A0A2D0R6Y9
LinkDB
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Position
6:32606698..32628767
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AA seq
1171 aa
AA seq
DB search
MTHSWPSQQPPGGGGTERFLYSDSKEGKRHSTQQKQVRNDAPVRMPRVAPHKSMLADDLK
LSSDEDDSDKGPHQTASWSENHNLSGQHTHTYGRRARHSSSGSSGSDSSSESGSSSQRSR
SPSPEPQTQPEIPSQPPPLTFSKENQRPSLTHWQLDKWLEKVHKTQQSDHDPGGGHSSCA
GFDSDRGPSPGRYWERDSGLGTRESYSPNQSPVPSPKFDYSPRHSHRSSPGYSPCPSPGI
SPVPSPVPSVCPSPGASLRISRSPSPLHLHPPKSPSPSLTSAPASPRIHSYTQVHQESSR
FTTQATFTSSPVRPPKVRPWLPPDHNTQRINDSRQKDSRQPALSQHHSKHNSTHKETPHK
SKSQSSESRSKSRSSPAPHQSQSSSRSNFSPKTKARHLSSTDRSTDRSHRPSDHKSKLNQ
SLNSKPKPSPTPKFKVVTETNSHSVHSSSSRPPPRPAPEISARSLSKPSSRLSPSTKPKT
KSREETRTSQKEQKPRDREPDLHSRGKDQGRALVQTIEAQRHRRLAEEQLIRQRWVRSSE
EEEEEEERRKDQGEREKKRRRRKEHNAEWQAVQPKQRPHTNSQHQPRTEYSGPEREDQKR
KKRRRSSEEHSSNPGVIDSNPSPPLSPPSPTPVVRPIRRPFTSSSSSTSSSSSSSSSDSD
SEPSPPPNVAKVPADSTSSQKPKQRHQEQCRPSELRSNDASPDEGQQCPGKHKLYTLVPF
GRTEQSTTVSHRGLRNLVVKIDLSLLARVPNTSEVPHRGSSSSSSSSSTAKAKEKTSMRH
QYHQDQETGDAKSKRKAENGETQRESKRSHVHTEKLPAPTHSADIEKQEAHSNNRQNDHH
ADYVYTKRPLSPLTPPSASKMQHSDKQHTNPPRDRDSTVKKPQIQKARPKIEAECAGVSG
NIQPTSGTWAPSAKESSCGGTVPYTDVSHHAEYYMHEAKRLKHRADAMVDKLGKAVNYVD
AALSFMECGKAMEEGPLEAKSPYTMYAETVELIRYAMRIKSHTSPGARQEDRQLAVLCFR
CLALLYWQMFRLKKDHALKYSKALTDYFKTLPKVPHIPPPWNDSAKGNVPSTCISPVGLT
GSQPGSSITYPFINIPQRIHQMAANHLNITNSVLYSYEYWEVADTLAKENKEFFNYLNTL
TGPLTLHSSMAHIVQYTRQGLQWIRISANLS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacccactcctggccttcccagcagcccccaggtggaggggggacagaacgattcctg
tattcagattcaaaagagggaaaacgccacagcactcagcagaaacaagtaaggaatgat
gcccctgtaaggatgccacgtgtggcccctcacaaatccatgcttgctgacgacctgaag
ctcagtagtgatgaggatgacagtgacaagggacctcaccaaaccgcttcctggtccgaa
aatcacaatctgtcagggcagcacacacacacatatggcaggagggcaagacattccagc
tcgggctcgtcaggatctgattcctctagtgagtctgggagcagtagccagcggtcacgc
agcccaagcccagaaccacagactcagcctgagatccccagccagccaccgcctcttacc
ttcagcaaagagaatcagagaccatccttgacacactggcagctggacaagtggcttgag
aaagttcataaaacccaacagtcagatcacgacccaggaggaggtcacagctcttgtgca
ggctttgattctgatagaggaccatctccaggaagatactgggagagagattctggcctt
gggacaagagagagctacagcccaaaccagagccctgtccccagccctaagtttgactac
agccccaggcatagtcatcgatctagtccaggatatagcccttgtccaagcccaggaatt
agtcctgtgccaagcccagtgcccagtgtttgtccaagcccaggtgctagcctaagaata
agtcgaagtcccagtcctttacaccttcacccacccaaaagccctagcccgagcctcacc
tctgctcctgcctctccaagaatccattcctatactcaggttcaccaggaaagctctagg
tttactacacaggctacatttacctccagtcctgtgcgtccacctaaggtcagaccatgg
ttaccaccagaccataacactcaacgtattaatgactctagacagaaagattctagacaa
cctgccctatcacagcatcattccaaacacaactcaactcacaaagagactccacacaag
tcaaaatcccaaagcagtgaatctagatcaaaatccaggtctagtcctgcaccacatcag
tctcagtctagttccaggtccaatttcagccctaaaacaaaggccaggcacttgtcttcc
actgaccgcagcactgaccgtagccacagacccagtgatcataagagcaaattgaaccag
agtttaaattccaaaccaaagcccagccccacacccaaatttaaggttgtgaccgagaca
aacagtcactcagtccacagttccagctctaggccaccacctcggcccgccccagagatt
tcagccaggtctctctcaaaacctagctcgagactcagccccagcacaaaacccaaaaca
aaatctagagaggaaactaggacttctcagaaggagcaaaagccgagggaccgagagcca
gatttgcatagccggggtaaagaccagggaagggccctggtccaaactatagaagctcaa
agacacaggagactggcggaggagcagctgataaggcaacgctgggtccggagttctgag
gaagaggaggaggaagaggagaggagaaaagaccaaggagaaagagaaaagaagagaagg
aggaggaaggagcataatgctgaatggcaggcggtacagcccaagcagagaccccacacc
aacagtcagcatcagccccgaactgaatacagtggacctgagcgggaggaccagaagagg
aagaagaggaggaggagcagtgaagagcactcctccaaccctggagttatagactccaac
ccttctcctccactatccccaccctctcctactcctgtcgtccgccccattcgtcgacct
tttacctcttcttcctcttcgacttcttcttcttcctcctcgtcttcctcggactcagac
tctgagcccagtccgcccccaaatgttgctaaagttcctgcggactctacatccagccag
aaaccaaagcagaggcatcaggagcaatgcagaccctctgagttgagatcaaatgatgct
tcaccagatgaagggcaacagtgtccaggcaaacacaaactctacacactggtgccattt
ggccgtactgaacagtccaccactgtctctcatagaggactgaggaatctggtcgtcaag
atagacctctcacttctggccagagtccctaacacaagtgaggtcccacacagagggtct
tcatcttcttcatcatcttcatcaacagctaaagctaaagaaaagacctccatgaggcat
cagtaccaccaagaccaagaaactggagatgccaaaagcaaacggaaggctgagaatgga
gagactcaaagggaaagtaagagaagccatgttcacactgaaaagctcccagctcccact
cactcagctgacatcgaaaagcaggaggctcattccaacaacaggcagaatgatcatcat
gcggattatgtttacaccaagcggccactgtccccactcactcctccatctgcttcaaag
atgcagcattcagacaagcaacacacaaacccaccaagagacagagactccactgtgaaa
aaaccacagatacaaaaagctcggcccaagattgaagcggagtgtgctggagtgtcagga
aacatacagcccacttctggaacctgggctccttctgcaaaggaatcgtcctgcggagga
actgtgccttacactgatgtctcacaccatgcagagtactacatgcatgaagccaaaaga
ttgaagcatcgagctgatgctatggtggataaactggggaaagctgtgaattatgtggac
gctgctttgtcctttatggagtgtggcaaggccatggaggaaggccctctggaagctaag
tctccttatacaatgtatgcagaaactgtggaactcataagatatgccatgaggataaag
agtcacacaagccctggagccaggcaggaggacaggcagctggctgtactttgtttccgt
tgtcttgctcttctatattggcaaatgttccggctgaaaaaagaccatgccctgaaatac
tccaaagccctgacggactacttcaagactttaccaaaagtgcctcacataccacctccc
tggaacgatagtgcaaagggaaatgtgccttccacttgcatatcccctgttggtttaact
gggtcccaacctggcagctctatcacctaccctttcatcaacattccccagcgtatccac
cagatggcagcaaatcacctcaatattaccaacagtgtgctttacagttatgagtactgg
gaggtagctgacaccttggccaaggaaaacaaagagttttttaactatctgaacacactg
actggacccctgaccctacacagcagcatggctcatatagtccagtacacaagacagggg
ctacagtggatacggatcagtgccaatttatcctag
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