Ictalurus punctatus (channel catfish): 108267063
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Entry
108267063 CDS
T04658
Symbol
rnf115a
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108267063 (rnf115a)
04121 Ubiquitin system [BR:
ipu04121
]
108267063 (rnf115a)
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108267063 (rnf115a)
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
108267063 (rnf115a)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108267063 (rnf115a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4
Zn_ribbon_19
zf-RING_5
zf-Nse
zf-ANAPC11
zf-C3HC4_3
DUF8608
FAR1_N
C1_2
HypA
DUF7560
zf-RING_6
Pcf11_C
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
108267063
NCBI-ProteinID:
XP_017326479
Ensembl:
ENSIPUG00000008615
UniProt:
W5UKM4
A0A2D0R7B9
LinkDB
All DBs
Position
1:complement(12696456..12708157)
Genome browser
AA seq
311 aa
AA seq
DB search
MAEAAAVPPHRFFCHCCKGEVRPKLPEYICPRCDSGFIEEVTEDSSLLDSSTNGLDDTAS
QFAELWQLLFVERPFTVDLDSPDSEPRVPGGAGGLGLGGGPFGGSVPGGLSGNLGGPLGG
GGEHWGPSRPPRLHTQRRYRSRGSSRPDRSPAVEGIVQQFLAGLFANSGAPGSPPLSWTG
MLHSNPGDYAWGQGGLDAVITQLLGQFENTGPPPAEKEKISSLPTVIVSQEQADSSLECP
VCKEDYTVGEPVRQLPCNHFFHSDCIVPWLELHDTCPVCRKSLSGEDSGNQPPSEPSSIN
TEPRTQERWSY
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctgcggcagttcctccgcatcggtttttctgtcactgttgtaaaggcgaa
gtgagaccaaaactcccggaatacatctgccccagatgtgactctggatttatcgaggag
gtgacggaagactccagtcttctggacagtagtacgaacggccttgatgatacagcttca
cagtttgcagagctctggcagcttctgttcgtggagcggccgttcacagtggacttggac
agccctgactccgagccacgggttccaggaggtgctggaggactaggtctgggaggaggg
ccgtttggtggctccgtccccggaggcctcagcgggaacctcggtggccctttaggagga
ggaggagagcactggggtcccagccgtccccctcgcctgcacactcagaggagatacaga
tccagaggaagcagtcggccggatcgctcccccgctgtagagggaatagtacaacagttt
cttgctggcctttttgccaattcaggtgctccaggttcccctccactgtcatggacgggc
atgctgcactcaaaccctggtgactatgcctgggggcaggggggtctggatgcagtcatt
acacagttactgggtcagtttgagaacacaggtcctcctcctgcagaaaaagagaaaatc
tcctccctccccacagtcattgtttctcaggaacaagctgacagcagtttggagtgtccg
gtgtgtaaggaggactacacagtcggggagccagtcaggcagctgccctgtaaccatttc
ttccacagtgactgcattgtgccctggctagaactgcatgacacatgtccggtatgcagg
aagagtttgagcggagaggacagtggtaatcagccaccctcagagccctcctccataaac
accgagccccgcacacaggagagatggtcctactga
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