Ictalurus punctatus (channel catfish): 108267272
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Entry
108267272 CDS
T04658
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein
KO
K17341
hemicentin
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108267272
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
108267272
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
ig
I-set
V-set
Ig_4
Ig_5
FlaX
C1-set
TMEM51
Motif
Other DBs
NCBI-GeneID:
108267272
NCBI-ProteinID:
XP_053537809
UniProt:
A0A9F7THW2
LinkDB
All DBs
Position
7:complement(26269887..26305731)
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AA seq
1706 aa
AA seq
DB search
MDCTTERPKAVLTLQPDGPIFSGQEVTFTCEIRGHAEIEWMYNWYKDGVQIFSYTENSKY
SFTAAESISAKLTCSGRRRNDSQTSETSNAVTLTVSEKPKPTVRVNPQSSVYTGDRVTLN
CNLLSNGWTFLWYKDRVQVAEDTDTLHDTVSNAGETVYQCKARRGKYDSALSDPVTVTVR
ALPKPVVSINPDEQVYRGETVTLRCDIQDEEDSDWIYSWNKDRSFVSIEQEYRISSAETS
HAGKYTCRGRERGGSHSSHTSDAVTLTVSEKPKPELTPSREGAVLKGNSVTLSCTLKLQS
AGWKFYWIKPTQSTETETEAETDYYTETYSAVRISDEGQYRCRAGRGNPVYYTHYSDALW
VNVTESPKAVVTIKPDKHVFRGETVTLRCEIQGGGDTEWKYSWYKKYNMPYPYRITQEFS
FSSVINGNSGEYTCRGRRSSDSQSSEISDAVTLTVSDVAEAVVSVSPLRWLTEGDSVTLS
CEVKHSSTGWIFSWYTEVPSRDSQGSLRYSTALLSDSSRGSGGSYTLSPVTVNHTGVYMC
SAERGEPVFHTRLSNLQPLCITGESPPVSLIINPSRSQHFTADSLSLSCEDQSDSTGWTV
SGYTHRETVSDCPSVSGSTCNISFLSTSHTGVYWCQSESGGRSNPVNITVHNGDVILDSP
VHPVTEGHPLTLHCLSHNSKTSDSGVDFYKDGSILQNKTTGEMTISTVSKSDEGFYHCKH
PERGESPKSWVSVSFQNSGSGSSIDIVFLAVGLSSALLFIILLLILLWWHKSNKGKDKDI
QQNSNQTPGQNPSQSGAEDSQSRHTPLQTDAHIYATVENASKSDAAAEPSGDVYAQVMKK
KESYKNKDDDAGPSDVTYTELELKPQEKTKKNQVKASVEYETVYSQLKQNTLLISLIRVG
QAQAEIIPVLSVEPNSPQIFRGETVTLTCRISGGNGLYYWYKDGVNVHRSAENYYIIKVD
QSHKYRCYGSVDGWSTTWSNEMILSVIERPKAVLTLQPDGPIFSGQEVTFTCEIRGHADT
ECMYNWYKDGVQISSSVKNSKYSFTAVEPLSATYTCSRWRRSDSQTSESSNAVTLNVSEK
PKPELTSSREGAVLKGNSVTLFCILNLQSTGWKFYWIKPTQSTETETETEIQYYTISSRS
ISDGGQYRCRAGRGNPVYYTHYSDALWVNVTESPKAVVTIKPDKHVFRGETMTLRCEIQG
GGDTEWTYSWYKNDKTFYPTTQEFSFSSVINGNSGEYTCRGRRSSDSQSSEISDAVTLTV
SDVAETVVSVSPLRWLTEGDSVTLSCEVKHSSTGWTFSWYTEIPSRDSQGSLRYSTALLS
DSSRGSGGSYTLSPVTVNHTGVYMCRAERGEPVFHTRFSNLQPLWITGESPPVSLIINPS
RTQHFTADSLSLSCEDQSDSTGWTVRRYTHSETVSDCSSVSGSTCNISFLSTSHTGVYWC
QSESGGRSNPVNITVHNGDVILDSPVHPVTEGHPLTLHCLSRNSNISASGIDFYKDGSVL
QKKTTGEMTISTVSKSDEGFYHCKHPERGESPKSWVSVRDSGSGSSIDIVFVAVGLSLAL
LFIILLLILLSWHKSNKGKDRDIQQNSNQTPGQNPSQSGAEDSQSGYTPLQTDAHIYATV
ENASKSDSAAELSGAVYAQVMKKKELYKNKDDDSGTSDVIYTELELKPQKKTKKNQHKAI
RIYLYKFPLKASVEYETVYSQLKQNT
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggactgtaccactgagagaccaaaagccgttctgactctgcagcctgatggaccgata
ttcagtggacaggaagtcactttcacatgtgaaatacgaggacatgcagagattgagtgg
atgtacaactggtataaagatggtgtccaaatattctcctacactgagaacagtaaatat
tcattcactgctgcagagtcaatcagcgctaaactcacctgcagtggacggagaagaaat
gactctcagacctcagagaccagcaacgctgttacactcactgtgtcagaaaaacccaaa
ccgactgtgagagtgaatcctcagagctccgtctacactggagacagagttactctgaac
tgtaatctgctgtctaatggatggacttttctctggtacaaagatcgagtccaagtagct
gaagacaccgacacactccatgatacagtctctaatgcaggagaaacagtgtatcagtgt
aaagcacgcagaggaaagtacgactcagcgctcagtgatccagttacagttacagttaga
gcgctcccaaaacctgtggtgtccataaatcctgatgaacaggtgtacagaggagagact
gtcactctcagatgtgacatacaggatgaagaggactctgactggatctacagctggaat
aaagatcgttcttttgtcagtattgaacaggagtacagaatcagtagtgctgaaacatct
catgcaggtaaatacacctgtagaggaagagagagaggaggctcacactcctcacacacc
agtgatgctgttacactgactgtatcagaaaaacctaaacctgagctcacaccaagtcgt
gaaggagctgtactgaaaggaaactcagtgactctgtcctgtacactgaagctgcagtct
gctggatggaagttttactggatcaaacccacacagagtactgagactgagactgaagct
gaaacagactactacactgaaacatacagtgcagttagaatctctgatgaaggtcagtac
aggtgcagagctggaagaggaaacccagtctactacacacactacagtgatgcactctgg
gtaaatgttactgagagtcctaaagctgtggtgaccataaagcctgataaacatgtgttc
agaggagagactgtgactctcagatgtgaaatacagggaggaggagacactgagtggaaa
tacagctggtataagaaatataacatgccctacccataccgcataacacaggagttcagc
ttcagctcagttataaatggtaacagtggtgaatacacctgcagagggaggagaagcagt
gactctcagagctcagagatcagtgatgctgttacactcactgtatcagatgtagcagag
gcagtagtgagtgtgtctccactgcgctggctgactgaaggagactcagtgactctaagc
tgtgaggttaaacactcctctacaggctggatattcagctggtacacagaggttccctcc
agagacagtcagggttccctcaggtacagtacagcgctcctctcagatagcagcagagga
tctggaggctcctacactctcagtcctgttactgtgaatcacacaggagtttatatgtgc
agcgcagagagaggagaaccagtctttcacacacggctcagcaaccttcagccactgtgc
atcactggtgaatctcctccagtgtctctgatcatcaatcccagcagaagtcaacacttt
actgctgactctctctcactgagctgtgaggaccagagtgactctactggatggacagtg
agcggatacacacaccgtgagacagtgtctgattgtccttcagtttcaggatctacatgt
aacatcagcttcctctctacatcacacactggagtttactggtgtcagtctgaatctgga
ggacgcagtaatcctgtcaacatcacagtgcacaatggtgatgtgatcctggacagtcct
gtccatcctgtgactgagggacatcctctgactttacattgtttatctcacaactcaaag
acctcagattctggtgttgatttctataaagatggttccatcctgcagaacaagactaca
ggagagatgactatcagtactgtctcaaagtcagatgaaggtttctaccactgtaaacac
ccagagagaggagagtcaccgaaaagctgggtttcagtcagctttcaaaactcagggtct
ggatccagtattgatatagtatttctggctgtgggactgagttcggccttgctgttcatc
atccttttactgatcctgctttggtggcacaaatccaacaaaggaaaggacaaagacata
cagcagaacagcaatcagacaccaggccagaacccgagtcagtcaggagctgaggattct
cagtcaagacacactccacttcagaccgatgcgcacatttatgccacggtggagaacgca
agtaaaagtgacgctgcagctgaacccagtggggatgtttatgcacaggtcatgaagaaa
aaggagtcatacaagaataaagatgatgatgctggacccagtgatgtgacttacactgag
cttgaactcaagccacaggaaaaaacgaagaaaaatcaagtgaaggccagtgtagagtat
gaaactgtttactcacagctgaagcagaacacattgcttatttcacttatccgagtcgga
caagctcaagcagagattataccagttctgtctgtggagccgaattcaccacaaatattc
agaggagagacggttacactcacatgtaggatttcaggaggaaatggactgtactactgg
tacaaagatggtgttaatgttcacagatctgctgaaaattactacattataaaagtagat
cagagtcacaaatacagatgttacgggtctgttgatggatggtcaacgacatggagtaat
gaaatgattctctcagtgatagagagaccaaaagccgttctgaccctgcagcctgatgga
ccgatattcagtggacaggaagtcactttcacatgtgaaatacgaggacatgcagacact
gagtgtatgtacaactggtataaagatggtgtccaaatttcctcctctgttaagaacagt
aaatattcattcactgctgtagagcctctcagcgctacatacacctgcagtcgatggaga
agaagtgactctcagacctcagagagcagcaatgctgttacactaaatgtgtcagaaaaa
cctaaacctgaactcacatcaagtcgtgaaggagctgtactgaaaggaaactcagtgact
ctgttctgtatactgaatctgcagtctactggatggaagttttactggatcaaacccaca
cagagcactgagactgagactgaaactgaaatccagtactacaccatcagctcacgtagc
atctctgatggaggtcagtacaggtgcagagcaggaagaggaaatccagtctactacaca
cactacagtgatgcactctgggtaaatgttactgagagtcctaaagctgtggtgaccata
aagcctgataaacatgtgttcagaggagagactatgactctcagatgtgaaatacaggga
ggaggagacactgagtggacatacagctggtataagaatgataaaacattctaccccaca
acacaggagttcagcttcagctcagttataaatggtaacagtggtgaatacacctgcaga
gggaggagaagcagtgactctcagagctcagagatcagtgatgctgttacactcactgta
tcagatgtagcagagacagtagtgagtgtgtctccactgcgctggctgactgaaggagac
tcagtgactctaagctgtgaggttaaacactcctctacaggctggacattcagctggtac
acagagattccctccagagacagtcagggttccctcaggtacagtacagcgctcctctca
gacagcagcagaggatctggaggctcctacactctcagtcctgttactgtgaatcacaca
ggagtttatatgtgcagagcagagagaggagaaccagtctttcacacacggttcagcaac
ctacagccactgtggatcactggtgaatctcctccagtgtctctgatcatcaatcccagc
agaactcaacactttactgctgactctctctcactgagctgtgaggaccagagtgactct
actggatggacagtgagaagatacacacacagtgagacagtgtctgattgttcatcagtt
tcaggatctacatgtaacatcagcttcctctctacatcacacactggagtttactggtgt
cagtctgaatctggaggacgcagtaatcctgtcaacatcacagtgcacaatggtgatgtg
atcctggacagtcctgtccatcctgtgactgagggacatcctctgactttacattgttta
tctcgtaactcaaatatctcagcttctggtattgatttctataaagatggttcagtcctg
cagaagaagactacaggagagatgaccatcagtactgtgtcaaagtcagatgaaggtttc
taccactgtaaacacccagagagaggagagtcaccgaaaagctgggtttcagtcagagac
tcagggtctggatccagtattgatatagtatttgtggctgtgggactgagtttggccttg
ctgttcatcatccttttactgatcctgctttcgtggcacaaatccaacaaaggaaaggac
agagacatacagcagaacagcaatcagacaccaggccagaacccgagtcagtcaggagct
gaggattctcagtcaggatacactccacttcagaccgatgcgcacatttatgccactgtg
gagaatgcaagtaaaagtgactctgcagctgaactcagtggggccgtttatgcacaggtc
atgaagaaaaaggagttatacaagaataaagatgatgattctggaaccagtgatgtgatt
tacactgagcttgaactcaagccacagaaaaaaacaaagaaaaatcaacataaagctatc
cgtatatatttatataaatttccattgaaggccagtgtagagtatgaaactgtttactca
cagctgaagcagaacacatag
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integrated database retrieval system
