Ictalurus punctatus (channel catfish): 108267308
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Entry
108267308 CDS
T04658
Symbol
si:ch211-241e1.3
Name
(RefSeq) laminin subunit alpha-3 isoform X1
KO
K06240
laminin, alpha 3/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108267308 (si:ch211-241e1.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108267308 (si:ch211-241e1.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
Laminin_B
Laminin_I
Laminin_G_2
Laminin_II
EGF_LMN_ATRN
Laminin_G_1
HAUS-augmin3
MbeD_MobD
Laminin_G_3
MscS_porin
Motif
Other DBs
NCBI-GeneID:
108267308
NCBI-ProteinID:
XP_053537540
UniProt:
A0A9F7RBG9
LinkDB
All DBs
Position
7:27730926..27842999
Genome browser
AA seq
3002 aa
AA seq
DB search
MARGRRATLNSAAQLLVPCVICVLVAVRARASVNDVPGGFSMTPPYFNLAESSVISATAT
CGEEENGNPRTDLYCKLVGGPTVGLTSQTIQGQYCDHCNANNPEKARPVSNAIDGTERWW
QSPPLSRGLRYNEINVTLDLGQLFHVAYIIVKFANSPRPDLWVLERSVDHGKTFSPWQYF
AHLKQDCIERFGKEPNSRIVGDDDQICTTEYSRIVPLENGEIFVSLVNGRPGSKNFAYSP
ALQEFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISVGGRCVCHGHAHS
CGVRVPGRQNLLQCECQHNTCGESCDRCCPGYHQKAWRVATTDSQNECEPCQCHSHATDC
YYDAEVERRRASLNIHGRYDGGGVCINCQHNTAGVNCEVCAEGYYRPHGVPPESPTGCIP
CRCDDRTTSGCEMGSGRCLCKPQYNGDHCDRCARGYHDYPQCTPYIDHLIKTPAPPTGNA
VDCPVGFFGAPNCQPCVCERAGTVPEICSVSGQCLCRPEVTGQSCDRCRPGHHSFPYCHL
CRCDGPGVYDLSCEPTGQCRCRPNYIGLQCEQCAMGHYAYPTCSPCHCSREGSLDGSCDP
KSGQCVCNPAVTGHRCDRCVEPDQTFPDCFDLDTSCNSAGSDVDTKDPLTEACICLPYVE
GPECEHCKPLYWNLDPENPTGCAECMCDVKGTQSGVGECHEKTGECFCKPNICSHACDTC
DDGYFLLQEKNYFGCQGCHCDVGGAVGRGCDELTGQCRCRKHMRGRTCSEPEPSFYIPDL
HHLKFEAEHGIMPNARPVRFGYDPNEFPQFSWRGYATLSRAQPEVEVYVVVTSPGPFTVV
MRYMTAGVHTPVRGRVLLVAGSSFYSHCSWSGDSKEVLFPPSRSPAFLTVPGDGFAQPFT
LSTGKWIVCVQAEGILLDYLVLLPSAYYEARILQQEITEPCTYRSGDGNCLLYKHVPLDG
FPSALASQSLGSAHRHGRIRQPTADHPELVSVNGRQLRLMLHVPESGSHVLVLEYASEVD
AYQNVNVHIGGQPKDQVQTRANIYTCAYSFLCRSVVVDGQNRIAHFLLPPKAEILLQSPT
RSVLLYRVYAVPSDEFTMELVQPSVLCVSRHGRFTEDSKHCVQSQFNTPPTALTLDASTV
TRPSRFSTQASGRCDGPLLKSPQTEVELRAHVPQTARYIFIVHYCQPEHTTFPVEVLLDS
GEIWKGHVNASFCPSVSGCRSVVIADRRIALDVRKQTLSITLKIPKGKTLTLDSVLVIPE
ESYSPELLNPKALDKASDFINQCGAQGFHIDHHSASEFCKSSARSLVAHYLDGALPCHCD
QSGSTSPTCEPIGGQCHCRPHVIGRQCSRCATGFYGFPYCRPCQCGRRLCDEVTGECICP
PQTVRPACDVCQSETFSYHPLLGCEGCDCSPTGIRNGDTGQCDVTTGQCICKPRIGGRRC
SQCVAGYYRFPDCLACSCNAGGVTAQICDPNTGRCLCKSNVEGPRCDVCRKGSFHFDPSN
PRGCTECFCFGVTEQCRSSDKRRGKFVDMRSWRLVTADQDEVGSVLNPLSNTVVADVQEL
PASVLQLHWVLPQSYLGDRVSSYGGYLTYQVKSFGLPREGMSLLDKQPDVILKGEKMTVV
YQDAQSPLPDRVYQGRMQLVEGSFRHSGTNRPVSRAELMRVLAQLEAVWIRALYFSHTQR
LSVGEVGLEEASRVGTGAPAGNVEVCTCPPEYTGDSCQRCARGYYSDRNGRCVSCACNGR
SDDCDEITGRCLNCQDDTAGDHCERCKDGYYGNAALGTCTICPCPLRLESNNFAVGCSEV
SGRIRCQCKPGYAGEKCERCAPGYFGRPEVYGGSCQPCKCNGNSCSPTTGVCNYIQDPKD
TNTAEECTECDSCAQTLLNDLERIDGDLARLKMQLDSINSSSEAHKRLKELEKAISEVKR
MVITYTTDVGKLRPKVTELERDVRALTLDINKLKQEAEKRSDEAQKSVRNVENTHKKARD
LNSQILDLFRKIQELLKQLSDPSPDGSITLPSGDADKLLREAKRLVQVMQERSFSPQKDA
AEKELDEAKKLLDYIRNNCTKQFNQNQEAADRIRGLLNDYEDKLKELDKALKEASETVQK
ANTQNTLNAQTLTDQLKRINDLEREKTSVQNDIAMAKQQLKGVEDLLKMLSESKKEYENM
AAELDGAKTELTNRLNSVSRAAALQGLVKDAEDHAALLNKLANQLQEAVKNSSGRADVKD
ALAAVDAYKNITEAIKAAEEAAKKAKEAADKALNDVIRGDISNRAKDLNDRGTSLQKDAK
NAEKDLKQLKDDLKEQQQRLDDARKKQTRLDEDLRDINNDLNNIQRDDIATMIDIAKRTA
GAANASASNTMNRLKDINAEINAIKALNVNGTPDQANINRILSDVDMAVKNLSNSIPSLL
DKFNQVEKLSSDIDPNNNISYNIMRIKELIEQARSAANRVPVPMKFTGLEHVELRLPRTL
DDLRAYTTMSLLLHRPMGRGDGRRRRRQSNGDDGNLFVLYLGNKDTKKDYLGMALRNNVL
YFVYKLNGIVQEIESVDITLSNPDRIFMDKVDMRRIYEDAQVNLTKLFTTNKPDQEVPRS
AQGDALNNLLDLHPSEAVFYVGGYPNDFTPPPPLNYPGYRGCIEFNMFNEKFMSLYNFKS
LGPENVTLQMPCKRYIQQEEGEYLDGTGYIQLQLENVLRRLNIFQKIETRAENGILLYMG
NENSYYLITLENRYLVLRSKIGDKPLVTKRSTDTQDLNEELKVLFDSINNVIQIRFRTKN
DVVVTGPYAFEAFDSYFIGGVPSDLRRRYNITVPPLRGYVTGLSAAGKAPSPLNKVGAGR
SYGSKMLALRNAEFSTGSSLDSPPTGFSLDGALTLSLGFKSTGKDGLLLQNKQASKKIGL
SMVNGYVVLKDENRAWSSNKQYQDGEWHYVTATNKGGRMELRVDEDDTGKDFPQAPDLNF
LSNNVTLGAGSFTGCMSNVYLRRSDALYLPEDLSGFSSTGDVILDTCMSEHQPENMWDNP
KK
NT seq
9009 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggggcagaagagcaacgctgaactccgccgcacagctgcttgtaccctgcgtg
atctgcgtgcttgttgcggtgagagcgcgagcctcggtcaacgacgtcccgggcggattc
agcatgaccccgccgtactttaacttggctgagagctcggtcatttcagccacggctacg
tgtggcgaggaggaaaacggcaacccgaggacggatctgtactgcaaactggtcggaggg
ccgacggtgggattaacgagccaaactatccaggggcagtactgtgaccactgcaatgcc
aataaccctgagaaagcccgtccagtgagcaacgccatcgatggcacagagcgctggtgg
cagagcccgcctctctcgagggggctacggtacaacgagataaacgtcacgctggatttg
ggtcagctcttccatgtcgcttacatcatcgtaaagtttgccaactcgccccggccagac
ctgtgggtcctcgagcgctccgtcgatcacgggaagaccttctcgccctggcagtatttc
gcacatttaaaacaggattgcattgaaaggtttggtaaggagcctaacagcagaatcgtt
ggagatgatgatcagatctgtaccacagagtactcacggatcgtcccattagaaaatggc
gagatcttcgtgtctctcgtgaacggtcgtcccggatcgaagaacttcgcctactctccg
gcgctgcaggaattcaccaaggccacaaacatccgcctgcgctttttacggaccaacaca
ctgctggggcatctgatctccaaggctcagcgtgaccccactgtgacacgcaggtattac
tacagcattaaagacatcagcgtgggaggacggtgtgtgtgtcacggccatgcacattcg
tgcggagtgcgagtgccaggccggcaaaacctacttcagtgcgagtgtcagcacaacacc
tgcggtgagtcatgtgatcgctgttgccctggataccaccagaaggcgtggcgtgtggcg
acgaccgacagtcaaaacgagtgcgagccttgccaatgccattcgcatgccactgactgt
tattatgatgccgaggtggagcgcaggagagcaagtttgaacatacacggcagatacgac
ggtggaggcgtgtgcattaactgccagcataacaccgccggggtgaattgtgaagtgtgt
gctgagggttactacaggccccatggcgtccctccagagtctcctacaggctgcatacct
tgcaggtgtgacgacaggactacgagcggctgtgagatgggttccgggcggtgtctatgc
aaacctcagtacaatggagaccactgcgatcgctgcgccagaggctaccatgattaccca
caatgcactccgtatatagatcacctgattaagactcctgcacctccaactggcaatgct
gttgattgtcctgtgggtttttttggtgcgcccaactgtcaaccatgtgtgtgtgagcga
gctggtacagttccagagatctgcagtgtgtctggacaatgtttatgccgtcctgaggtt
acaggccagagctgtgaccgctgtcgtccgggccatcactccttcccgtactgccacttg
tgccgatgtgatgggcctggggtgtatgatctttcatgcgaaccgacgggtcagtgtcgc
tgtcgacccaactacatcggcctacagtgtgagcaatgcgccatgggacactacgcatac
ccgacatgctccccatgccattgttcgcgagaaggctctcttgatgggtcatgtgaccca
aagtcaggtcagtgcgtgtgtaatcctgccgtgacaggacacaggtgtgaccgctgtgtc
gaacccgaccagacctttcctgattgctttgacctcgacacctcctgcaattctgcaggg
tcagacgtagacactaaggatccattaacggaagcatgtatctgcctaccgtatgtagag
ggacctgaatgtgaacactgcaaacctctttactggaacctggatcctgaaaacccaact
ggctgtgctgagtgcatgtgtgacgttaaagggactcagagtggtgtgggtgaatgtcat
gagaaaaccggtgaatgtttctgcaagcccaacatttgcagccacgcctgtgatacatgt
gacgacggctacttcctgctgcaggagaagaactattttggctgccagggctgccattgc
gatgtgggcggggctgtagggcgtggctgcgatgagctgactggtcagtgccggtgccgg
aagcacatgcgcggccgaacgtgctctgagccagagcccagcttctacattcctgacctc
catcatctgaagtttgaggcagagcatggcatcatgcccaatgcccggcccgtgcgcttc
ggatacgacccaaacgagttcccacaattcagctggagaggctacgcgacactctcgcgt
gcgcagccagaggtggaggtgtatgttgttgtcacctcccctggtccctttaccgttgta
atgcgctacatgaccgccggcgtgcacacgcccgtgcgcgggagagtcttactggtggcg
ggatcgagcttttactctcactgcagctggtctggagatagtaaagaggtgctgtttcct
cccagccgctctcccgccttcctcaccgttcccggagacggattcgcccagcccttcact
ctcagtacgggaaaatggatcgtgtgtgtgcaagctgagggaatcctgctggactacttg
gtgctgctgcccagcgcgtactatgaagctaggattctgcagcaggagatcacagagccg
tgcacataccggtccggagacggcaactgtctcctctacaagcacgtgccgttggacggg
ttcccgtcagcgttggcgtctcagagcctgggctcggcacacagacacggccgcatccgc
cagcccactgccgaccatcccgagctggtgtccgttaacggcagacagctgcggctgatg
ctgcacgtccccgagtccggctcacacgtcctggttctggagtacgccagtgaagtggac
gcttaccagaatgttaacgtacatattggtggacaaccaaaggaccaagttcaaaccaga
gctaacatctacacctgcgcttatagcttcctctgtcgctctgtggtggtggatggacaa
aaccgcatcgctcactttctgcttccccccaaggctgagatacttctgcagtcccccacg
cgctcagtgctgctgtatcgcgtgtacgccgtcccttctgatgagttcaccatggagctc
gtccagccctcagtgctctgcgtctcgcgccacggccgattcacagaggacagtaagcac
tgcgttcagagtcagttcaacacacctcctacagcgctcacgttagacgcctcgaccgtg
acacggccgtccagattcagcactcaggcttcaggacggtgcgatggacctttgctcaaa
tcaccccagactgaagtggaactgagagcacatgttcctcagacagcccgctacatcttc
atagtgcactactgtcagcctgagcacactactttccctgtagaggtgctgctggactcc
ggggagatatggaaaggtcatgtgaacgcctccttctgtccctccgtgtccggctgcagg
agtgtggttatagcagacagacgcatcgctctggacgtccgtaaacagactctgtctatt
acactgaagatcccaaaaggaaaaaccctcactctggattctgtgctggtgattcctgaa
gaaagctacagccccgaacttcttaatcctaaagctctggataaggcttcggatttcatc
aatcagtgtggagctcagggatttcacattgaccaccacagcgcctcggagttctgtaag
agttcggcacgctctctggtcgctcactatctggacggcgctctgccttgccattgtgat
caatcaggatcaaccagccctacctgtgagccaataggaggacagtgccactgcagacct
cacgtgattgggcgccagtgctctcgctgtgccacagggttctacggcttcccgtactgc
agaccgtgccagtgcggccggcggctgtgtgacgaggtcaccggcgagtgcatctgtccc
ccgcagacggtgcgtcccgcgtgcgacgtgtgtcagagtgagacgttcagctatcacccg
ctgctgggctgtgaaggctgcgactgttcgcccactggaatccgtaacggagacacgggc
caatgcgatgtcaccaccggccagtgcatctgtaaacccaggataggtgggcggcggtgc
tcgcagtgtgtcgccggttactaccgtttccccgactgcctggcgtgctcgtgtaacgcc
ggaggagtgacggcgcagatctgcgaccccaacaccggacgctgcctctgcaagagtaac
gtggaggggccgcggtgtgacgtgtgtcgtaagggttcatttcattttgacccgagcaac
ccgagaggatgtaccgagtgcttctgcttcggtgtaacagagcagtgccgcagctccgac
aaacgcagggggaagtttgtggacatgcgctcgtggcgcctggtgacagctgatcaggac
gaggtggggagtgtgttaaacccgctcagtaatacagtggtggctgatgttcaggagctt
cctgcgtccgtgctgcagctccactgggttctgcctcagtcgtacctcggggacagggtg
tcatcttacgggggctacctcacctaccaggtcaaatcttttggcctcccacgtgaaggg
atgagcctcctagacaaacaacctgacgttattctcaagggagaaaaaatgacggtggtc
tatcaggacgctcagtcgcctttgccggacagggtttatcagggtcgcatgcagttagtc
gagggcagcttccgccacagtgggacgaacagacctgtgtcccgagcggagctgatgaga
gtgctggcgcagctggaggctgtatggatccgagctctctatttcagtcacactcagaga
ctcagcgtgggcgaggtgggcctggaggaggccagcagggtgggcaccggggcaccagcg
ggcaatgtggaggtctgcacctgcccaccggagtacaccggcgactcctgtcagagatgt
gctcgtggttactatagcgacagaaatggccgctgtgtttcctgtgcgtgtaatggacgt
tccgacgattgtgacgagattacagggagatgtctgaactgccaggacgacacagccgga
gatcactgcgagcgctgtaaagacggctactacggcaacgccgctctggggacctgcacg
atctgtccatgtccgcttcgcctggagagcaacaattttgctgtgggctgcagtgaggta
tctggaagaattcgctgtcagtgtaagcctggatacgcaggagaaaagtgtgagaggtgt
gctcctggatatttcggcagacctgaggtatatggaggcagctgtcagccctgcaagtgc
aacgggaactcctgctcacccaccaccggagtgtgcaattacatacaggaccccaaagac
acgaacactgcagaggaatgtacagaatgcgacagctgcgctcagaccttactcaacgat
ttggagcggatcgatggcgatctggcgcggctcaagatgcagctggactccatcaattcc
agctccgaggctcataagcgtctaaaagagcttgagaaagccatcagtgaagtgaagcgc
atggtgatcacttacacgactgacgtgggaaagctcaggcctaaagtgaccgagctggag
cgagacgtacgcgctctgactctagacattaacaagctgaagcaggaggctgagaagagg
tcagacgaggcccagaagtcggtgaggaatgtagagaacactcacaaaaaagccagagat
ctcaacagccagatcctggacctgtttaggaaaatccaagagctcctgaagcagttgagc
gatccgtcaccggacggcagcatcacccttccttcaggagacgcagacaaactgctgaga
gaggccaagcggctggtgcaggtgatgcaggaacggagcttcagccctcagaaggatgca
gcggagaaggagctggacgaggcgaagaaactcttagattacatcaggaacaactgcacg
aaacagtttaatcagaaccaggaagcagccgacaggatcaggggacttctgaacgactac
gaagacaagctaaaggagctggacaaggctctgaaggaagcgagtgagacggtgcagaaa
gccaacacacagaacacactcaacgctcagaccctcaccgatcagctgaaacgcattaac
gatttggagagagagaagaccagcgtgcagaacgacatcgccatggcaaagcagcagctg
aaaggtgtcgaggacctgctgaagatgctcagcgagagcaagaaggaatatgagaacatg
gctgcagagctggacggagcgaagaccgagctgacgaaccgattgaacagcgtctcccgg
gcagcggctctacaagggctggtgaaggacgcggaggatcacgccgcgctgctcaacaag
ctggctaaccaactccaggaggccgtaaagaactcgagcggccgagccgatgtgaaggac
gccctcgccgctgtcgacgcctacaaaaacatcacagaggcaatcaaggcagccgaggag
gcagcaaagaaggccaaggaggcagctgataaggctctgaacgatgtcattcgtggtgat
ataagcaacagggcaaaggatttaaatgaccgaggtacatcactccaaaaagacgctaaa
aacgctgagaaagatctgaaacagctgaaagatgacctgaaggagcagcagcagcgtttg
gatgacgcccgaaagaagcaaacccggctggacgaagatctgcgtgacatcaacaatgat
ctgaacaacattcagagagatgacattgctacaatgatcgatatcgccaagagaacagca
ggagcagcgaacgcctcagccagcaacacaatgaacaggctgaaggacataaacgcagaa
atcaacgctattaaagcgttaaacgtcaacggaactccagaccaggccaacatcaaccgc
atactcagtgacgtggacatggcagtgaaaaacctgagcaactcaatcccatcgctgctg
gataaattcaatcaggtggagaagctgagttctgatattgaccccaacaacaacatctct
tacaacatcatgcgcattaaagagctgatcgagcaagcacgcagcgccgccaacagggtt
ccagtgcccatgaaattcactggtttggagcatgtggagctgcgactcccccgaaccctg
gacgacctgcgagcctacacgacgatgagtctcctcctgcatcgtcccatgggccgaggg
gacggcagacggcggcgtcgccagagcaacggagacgacggcaatctgttcgttctctac
ctcggcaacaaggacacgaaaaaggactacctcggcatggccctgagaaacaacgtcctc
tattttgtttacaagctgaacggaatcgttcaggagatcgagtcggtggacatcaccctg
tcgaatccagatcggatcttcatggataaagtggacatgcgcaggatttatgaagatgct
caggtcaatctcacaaagttattcacgacaaataaaccagatcaagaagtcccaaggtcc
gcacagggagacgcgctaaataacctgctggacctccatcccagtgaagccgtcttctac
gtaggaggttacccgaacgacttcacccctccaccacctcttaattatcccggataccgg
ggctgtatagagttcaacatgtttaacgagaagtttatgagtctgtacaactttaagtca
ctgggacctgagaatgtcaccttacagatgccgtgcaagagatacatccagcaagaggaa
ggtgaataccttgatggcacgggttatattcagttgcagcttgaaaatgtcctcaggagg
ttgaacatcttccagaagatagagactcgagccgagaacggcatcctgctgtacatggga
aacgagaactcatactacctcatcacgctcgagaaccgctatctggtgctgcgtagcaaa
attggagacaaaccgctggtgaccaagaggagcacagacacacaggatttgaacgaggag
ctcaaggtgttattcgatagcataaataacgttatacagatacgtttccggacaaagaac
gacgtggtggtgactggtccatacgcttttgaagctttcgacagctacttcatcggtggc
gtcccctcagatttgagaagaagatacaacatcacggtgccaccattgaggggttatgtg
acgggtttgagtgccgccggcaaagctccatctccactgaataaagtgggtgctggccgg
agttatggcagcaagatgctggcattgaggaacgcagagttcagcacgggcagttcactg
gattctccgcccacaggcttcagtctggacggagctttgacactttcgcttggattcaag
agcaccgggaaggacggtcttctgctgcagaacaaacaggctagcaaaaagatcgggctc
tcgatggtgaacggatacgtggtactgaaggacgagaaccgtgcttggagttccaataaa
cagtaccaagatggagaatggcattacgttactgccaccaacaagggtggaagaatggag
ctccgagtcgacgaagacgacacaggaaaggatttcccacaggctcccgatctcaacttc
ctctccaataacgtcactctgggcgcgggctccttcacaggctgcatgtccaacgtctac
ctgagaaggtctgatgctttgtacttgccggaggacttgagtggtttttcctcgacggga
gacgtgatcttggatacgtgcatgtctgagcatcagcctgagaacatgtgggataacccg
aagaagtga
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integrated database retrieval system
