Ictalurus punctatus (channel catfish): 108267326
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Entry
108267326 CDS
T04658
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108267326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108267326
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108267326
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
108267326
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108267326
NCBI-ProteinID:
XP_017326845
Ensembl:
ENSIPUG00000011922
UniProt:
W5UIT9
LinkDB
All DBs
Position
7:28666205..28670229
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AA seq
245 aa
AA seq
DB search
MAGLELLSDQGYRLDGRKATELRKLQARMGVFGQADGSAYMEQGNTKALAVVYGPHEVRG
SRSKSLHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTQLYPRSQ
IDIYVKILQSDGGNYSACVNAATLALVDAGIPMRDYVCACTAGFVEDTPLADLCHAEESG
GGTTLSLALLPRSESIALVQMDARLHQDHLPALMEAATVACKGLSKVLDDVVRQHLQEVS
VQTRE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggctggactcgagctgctgtccgatcagggctaccggctggatggacggaaggctacc
gagctgcggaagctgcaggcccgcatgggggtgttcgggcaggcggacggatctgcgtac
atggagcagggcaacaccaaggcgctggcggtggtgtacggaccccacgaggttcgaggg
tccagaagtaaatcccttcacgaccgtgcggtcattaactgtcagtacagcatggctacg
ttcagcacggcggagaggaaaagacgaccgcacggcgatcgcaagtccagcgagatgagt
cttcacctgaaacagacctttgaggccgccgtcctcacacaactctacccacgctcccag
atagacatctatgttaagatccttcagtcagatggtggaaactacagtgcgtgtgttaac
gcagctactctggccctggtggacgctggcatccccatgcgtgattacgtgtgcgcctgc
acggctggctttgtggaggacacgccgctggctgacctgtgccacgctgaggagagtggc
ggtggcaccacactgtccctggcacttctgcctcgcagtgagagcatcgcactggtgcag
atggatgcccgtctccatcaggaccacctcccagcactgatggaggctgcgacagtggcc
tgtaagggtctcagcaaagtgctggacgatgtcgtgcgccaacacctgcaggaagtttct
gtgcagaccagagagtga
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integrated database retrieval system