KEGG   Ictalurus punctatus (channel catfish): 108267326
Entry
108267326         CDS       T04658                                 
Name
(RefSeq) exosome complex component RRP41
  KO
K11600  exosome complex component RRP41
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108267326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108267326
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     108267326
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     108267326
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 108267326
NCBI-ProteinID: XP_017326845
Ensembl: ENSIPUG00000011922
UniProt: W5UIT9
LinkDB
Position
7:28666205..28670229
AA seq 245 aa
MAGLELLSDQGYRLDGRKATELRKLQARMGVFGQADGSAYMEQGNTKALAVVYGPHEVRG
SRSKSLHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTQLYPRSQ
IDIYVKILQSDGGNYSACVNAATLALVDAGIPMRDYVCACTAGFVEDTPLADLCHAEESG
GGTTLSLALLPRSESIALVQMDARLHQDHLPALMEAATVACKGLSKVLDDVVRQHLQEVS
VQTRE
NT seq 738 nt   +upstreamnt  +downstreamnt
atggctggactcgagctgctgtccgatcagggctaccggctggatggacggaaggctacc
gagctgcggaagctgcaggcccgcatgggggtgttcgggcaggcggacggatctgcgtac
atggagcagggcaacaccaaggcgctggcggtggtgtacggaccccacgaggttcgaggg
tccagaagtaaatcccttcacgaccgtgcggtcattaactgtcagtacagcatggctacg
ttcagcacggcggagaggaaaagacgaccgcacggcgatcgcaagtccagcgagatgagt
cttcacctgaaacagacctttgaggccgccgtcctcacacaactctacccacgctcccag
atagacatctatgttaagatccttcagtcagatggtggaaactacagtgcgtgtgttaac
gcagctactctggccctggtggacgctggcatccccatgcgtgattacgtgtgcgcctgc
acggctggctttgtggaggacacgccgctggctgacctgtgccacgctgaggagagtggc
ggtggcaccacactgtccctggcacttctgcctcgcagtgagagcatcgcactggtgcag
atggatgcccgtctccatcaggaccacctcccagcactgatggaggctgcgacagtggcc
tgtaagggtctcagcaaagtgctggacgatgtcgtgcgccaacacctgcaggaagtttct
gtgcagaccagagagtga

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