Ictalurus punctatus (channel catfish): 108267407
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Entry
108267407 CDS
T04658
Symbol
puf60a
Name
(RefSeq) poly(U)-binding-splicing factor PUF60a isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108267407 (puf60a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108267407 (puf60a)
Spliceosome [BR:
ipu03041
]
Complex A
U2 snRNP components
U2 related factors
108267407 (puf60a)
Complex B
108267407 (puf60a)
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GFIT
Motif
Pfam:
RRM_1
RRM_7
DUF1543
Motif
Other DBs
NCBI-GeneID:
108267407
NCBI-ProteinID:
XP_017326939
Ensembl:
ENSIPUG00000002453
UniProt:
A0A2D0RAQ7
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Position
7:5418785..5433428
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AA seq
536 aa
AA seq
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MMENGQSTASKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQSLAQQQPINNIQLPNS
LQMASLTMAGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIK
SIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIID
QLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLAREPTTGKHKGYGFIEYDK
AQSAQDAVSSMNLFDLGGQYLRVGKAVTPPIPMMAPTAPGGLPPAAAVAAAAATAKITAQ
MAWNLSTPENRTEDFLNCLEAVAGASILGAMTAGSVNLPQMPQAVMAAQAPGVITGVTPA
RPVIPQVGLVNPVLASPPVISAAVAAAQEAKEKMDKEEEEAALDGTGQEMLSEQEHMSIS
GSSARHMVMQKLLRKQESTVMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ
GEEEDAEVIVKIFVEFSAASEMNKAIQALNNRWFGGRKVIAEVYDQERFDNSDLSA
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaatggacagagcacagcctcgaagcttggcctgccgcccctcacccctgaa
cagcaggaggctctgcagaaggcgaagaagtatgccatggagcagagcatcaagagcgta
ttggtcaagcagagcctcgcccagcagcagccaattaacaacatccagctcccaaattcc
ttacagatggcctcactgaccatggctggcttcggtgacccactttcacccttacagtcg
gttgccgcacagcgacagcgagcactcgccataatgtgccgtgtttatgtcggttcgatc
tactacgagcttggagaagataccattagacaagcgtttgctccgtttgggccaatcaag
agcatcgacatgtcctgggactcggttacacttaagcacaaggggtttgcattcgtagaa
tatgaggtaccagaggcagcacagctggctttagagcagatgaactcggtcatgttaggg
gggagaaacattaaagtgggacggccaagcaacatcggtcaggctcagccgatcatagac
cagttagccgaagaggcccgcgcctttaacagaatctacgtagcgtccgtgcaccctgac
ctgtcagacgacgacatcaagagcgtctttgaggccttcgggagaatcaagtcctgtatg
ctggcacgggaacccacgacagggaaacacaagggctacggcttcatagagtatgacaag
gcccagtcggcgcaggacgcagtgtcctctatgaacctgtttgatctgggtggtcaatat
ctgcgcgtgggcaaggcagtgaccccacccatcccgatgatggcgcccaccgcgcccggg
ggcctgccccctgctgctgctgtggctgctgccgcggccaccgccaaaatcaccgcccag
atggcatggaatctttccactccggagaatcggacagaagacttcctcaactgtctggaa
gcggtggctggtgcatccatcctgggggcaatgacagccggctcggtgaatttgccacag
atgccccaggccgttatggcagcccaggccccaggggtcatcacaggcgtgactccagca
cggcctgtgataccccaggtgggcttggtgaaccctgtcctggcctctccgccggtgatt
tccgctgctgttgctgccgcacaggaggccaaggagaagatggataaggaagaagaggaa
gcagccctagatggcacgggtcaggagatgctcagcgaacaggagcacatgagtatctcg
ggcagcagcgccagacatatggtcatgcagaaactgctgaggaagcaagagtcgacggtt
atggtgctcaggaacatggtcggccctgaagacatagacgacgacctggaaggtgaggta
acggaagaatgtggaaagtttggtgctgtcaacagagtgattatttaccaggagaagcag
ggtgaagaggaggatgccgaggtcatcgttaagatctttgtggagttttcagcagcgtcc
gagatgaacaaggccattcaggcgcttaacaaccgctggtttggaggtcgaaaagtcata
gccgaggtttatgatcaggagcggtttgacaacagtgatctctcggcatag
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