Ictalurus punctatus (channel catfish): 108267417
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Entry
108267417 CDS
T04658
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04382
Cornified envelope formation
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04518
Integrin signaling
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108267417
04518 Integrin signaling
108267417
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108267417
09142 Cell motility
04820 Cytoskeleton in muscle cells
108267417
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108267417
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108267417
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108267417
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108267417
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108267417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108267417
NCBI-ProteinID:
XP_017326953
UniProt:
A0A2D0R8N9
LinkDB
All DBs
Position
7:complement(21755195..21806923)
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AA seq
1680 aa
AA seq
DB search
MNKKLKSLQNLVAVLLFISLSIGVQQSESAACHGCGTGSKCDCSGVKGAKGDRGFPGQSG
HPGVPGFPGPEGPIGSRGEKGDDGPPGPPGPKGIRGPPGLPGFAGTPGIPGLPGSDGPPG
SKGIPGCNGTKGEKGFPGNPGFPGLDGSPGLRGDPGQKGEPGEVISMEIPGTSGIPGSIG
LPGPRGDPGPPGLPGPSGPQGPRGYNGPPGPPGPQGPKGNMGLNFQGPKGDKGETGLQGP
PGPPGQVDQLIGETDGVIHRGEKGDPGPPGPPGYPGPPGLPGPSDVKGEKGEPGEPGKRG
KPGKDGDPGPPGLQGAIGDPGDPGFPGRDGERGEKGERGLPGPPGVVTPPSLNQVGPKGD
PGIPGAPGRKGEPGLPGVQGPPGQPGQPGIGSQGLPGPPGYSGERGQKGDQGSPGASLPG
SPGRPGPQGFQGPPGPPGPPGISNGFENCLPGPAGLPGLNGEPGFPGEIGQKGEKGDTCV
NCFASGNLIPGPQGPPGPPGLPGSPGLPGFKGDRGSPGSPGLMGPPGLQGQQGSPGLSGQ
KGDPGDAIALDGMKGDKGDTGFPGPPGLPGRDGAPGRNGPPGAPGPKGAPGSLMLKGERG
PPGEPGLQGPPGDRGLTGAPGFGPQGPSGEKGFQGVSGRQGLPGPPGQKGEPGQTVSEKG
ATGPSGRDGEPGLPGNPGNPGQPGSPGFPGLPGQKGEPGLPGIGLPGPPGPKGFPGTAGT
PGSLGRPGPPGVDGLPGTPGFRGPKGEPGYGIPGPQGPPGLPGSKGFPGQKGDPGFPGNP
GAPGRPGIDGPPGYKGDSGLSGSPGAPGPQGPPGFGLPGLPGPPGLPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDPGSPGLSGPPGPPGLPGNPGNPGQDGLPGFPGQKGEMGVMGA
PGSPGNPGNPGVPGFPGAKGDNGQPGLQGNPGLMGTKGNKGEPGLRGPAGITDTSTVKGT
KGEPGLQGISGVPGPKGIPGLQGDPGIPGQDGRPGQPGPPGPKGDSGIPGTPGLPGPPGL
KGTMGEMGLPGPPGVKGNLGQPGRPGQPGSSGAPGFPGPKGDPGTPGFGQPGPQGPKGEP
GSPGIPGSAGIKGQQGPPGSPGIPGSSGAKGDPGLPGFQGAPGATGPKGLDGVPGAPGLA
GAPGRPGSPGPPGLSGAPGDKGQPGRDGIPGPAGLKGEPGIPGYGLPGPSGTPGMPGQKG
DPGFPGQPGSPGFPGPKGDIGPSGTIGSPGLQGPPGPPGQSIQGPKGNQGAPGPPGRGGP
PGPEGPRGPPGSGGVKGEKGYPGNPGSPGLSGQKGDTGPPGFLGPPGSPGTVGLKGDTGL
PGGIGFPGPKGQPGNPGVPGLRGDPGEPGRPGDPGEPGQAPAPIVVKGAQGPPGPPGPPG
SQGLPGEAGQEGLPGEPGSPGDPGPDGPPGYSGPSGRKGDQGPSGQPGQQGLPGPPGPDG
LPGPPGPPGLSSAAHGFLITRHSQSTDVPLCPIGTSLIYNGYSLLYVQGNERAHGQDLGT
AGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIKPYISRCA
VCEAPAMVIAVHSQTIQLPSCPQNWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFR
SSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRCIVCMKRT
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagttaaagagtctgcagaacctcgtcgccgtgctactcttcatatctctg
tccataggggttcagcagtccgagtctgcggcatgccatggttgtggaactggatcgaag
tgtgactgcagtggagtgaaaggcgcaaagggtgatagaggattcccaggtcagtcaggt
catccaggtgtaccaggattccctggaccagaagggccaattggatctcgtggagagaag
ggtgatgatggacctccaggaccacctggacctaaaggaataagaggacctcctggactt
ccaggatttgcagggacaccaggaattccaggtcttccaggatcggacgggcctccaggt
tcaaaaggaattccaggctgtaacggaaccaagggtgaaaaaggatttccaggaaatcca
ggtttcccaggtttagatggttcaccaggactacgtggtgacccaggacagaagggagag
cctggtgaagtcatctctatggaaataccaggaacatcaggaattccaggaagcatcggt
ctgccaggccccagaggagatcctggaccgcccgggttgccaggtcctagtgggcctcag
ggtccaagaggttacaatgggccaccaggtccccctggtccacaagggccaaagggaaat
atggggctgaacttccaagggccaaaaggagataagggtgaaactggcttacaggggcct
cctgggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcatcga
ggagagaagggtgaccctggaccacctggaccacctggatatcctggccctcctggatta
cctggtccatctgacgtgaagggagagaagggagagccaggagaacctggaaagaggggt
aaacctggtaaagatggggaccctggccctcctggacttcagggtgccataggagaccct
ggtgatcctggttttccaggaagagatggagaaagaggtgagaaaggtgagcgaggacta
cctggacctccaggcgtggtaacacccccatcactcaaccaagtaggacctaaaggagat
cctgggattcctggagcccctgggaggaaaggagagccagggctacctggtgtccaagga
ccaccaggtcagccaggtcagccaggaatcggaagtcaaggcctacctggcccccctggt
tattcaggagagcgaggacagaaaggagatcaaggatcgcctggagcttctcttccaggt
tctcctggtagacctggaccacaaggtttccaaggccctccaggaccgccaggacctcca
ggaatatcaaacgggtttgaaaactgcctcccagggcccgctggtcttccaggcctgaat
ggagaacctggtttcccaggagagataggccagaaaggtgaaaagggggacacgtgtgtg
aattgtttcgcaagtggcaacctcatcccaggaccacagggtccaccaggacccccagga
ctcccaggcagtcctgggctccctggttttaaaggagacagaggatccccagggagccct
ggtttaatggggccaccaggtttacaaggacagcaaggttcacctggactatccggacag
aagggtgaccctggtgatgcaattgcccttgatggtatgaagggagacaagggagacaca
ggattccctggccctccaggtctgcctggccgggatggagcacctggtcgaaatggacct
cctggagcacctggtcccaaaggcgcacctggttccctaatgcttaaaggtgaacgtggc
cctcctggagagcctggtctccaaggtcctcctggagaccggggccttactggtgcccct
ggatttggcccacagggaccttctggagagaaggggttccagggtgtgtcaggaaggcaa
ggacttcctggacctccaggtcagaaaggtgaaccaggtcagactgtctctgagaaaggg
gcaactggacccagcggacgtgatggagaacctggtctaccaggaaatccaggtaaccca
ggccaacctggctccccaggtttcccaggattacctggccaaaaaggagaacctggtctc
ccgggtataggcttgccaggcccaccaggccctaaaggattcccaggtactgcgggaact
cccggcagccttggcaggcctggacctcctggtgtggatggactgcctggtacacctggc
ttccgtggacctaagggtgaacctggttatggtatccctggccctcaggggcccccaggt
ttgcctggcagtaagggttttcccgggcaaaaaggtgatcctggattccctggaaatccg
ggtgcacccggccgacctggtatcgatggtccccctggctataaaggtgattctggtctt
tctggttcaccgggtgcacctggccctcaagggccccctggttttggtttacctggtcta
cctggaccaccgggacttccaggacctatgggcaatcctggttcccctggtttgaatggt
gagaaaggagaccctggttcgcctggactggatattccaggcttgcctggtgacccaggt
agccctggattgtctggaccacctggccctcctggccttcctgggaaccctggtaaccct
ggccaagatgggctacctggattccctgggcaaaagggagaaatgggcgtgatgggtgct
ccaggatctcctggtaatcctggtaaccctggtgttccaggatttcctggagcaaaaggt
gataatggtcagccaggtctgcaaggaaacccaggtttgatgggaacgaagggaaataaa
ggtgaaccaggtctaagagggccagctggtatcaccgatacttctacagtaaaaggaaca
aagggagaaccaggacttcaaggaataagtggagttccaggaccgaaaggtattcctgga
cttcaaggagatccaggtatccccggacaggatggacgccctgggcaacctggacctcca
ggtcccaagggagattccggaattccaggaacaccaggactccctggtcctccaggactg
aaaggcaccatgggcgagatgggattgcctggccctcctggagttaaaggaaacctaggt
caacctgggcgacctggacagcctggatcttcaggagcaccagggttcccaggaccgaaa
ggagaccccggaacgccaggatttgggcaaccaggacctcaaggacccaagggtgaaccc
ggctctcctggtatccccggatctgcagggataaaaggtcaacagggccccccaggaagt
ccagggatacctgggagctctggcgcaaagggtgatcctggcctcccaggattccaaggt
gcacctggtgctactggtcctaaaggtctggatggagtcccaggtgcccctggtctagca
ggagcacctggaaggccaggaagccctggcccacctggtttgtcaggtgcacctggagac
aagggtcaacctggtcgtgatggtattcctggaccagcaggattgaaaggagagccaggt
ataccaggttatggactcccaggtccttctggcactcctgggatgccaggtcagaaagga
gaccctggctttcctggccagcctggcagccctggattccctggaccaaagggtgatata
ggaccctctggtacaataggtagccctggtctacaagggccccctggtcctccgggtcag
tccattcaagggcctaaaggcaaccaaggtgctcctggaccaccaggaagaggaggccct
cctggcccagaggggccccgtggacccccaggttctggaggagtgaagggtgagaaaggc
taccctggaaaccctggatcacctggtttatctggacagaaaggagacactggaccacca
ggttttttgggcccccctggatctcctggaactgttggacttaaaggtgacaccggcctt
ccgggtggtataggattcccaggacctaaaggtcaacctggcaatcctggggttcctggc
ctgcgtggtgatcccggggagcctggtcgtccaggtgatcctggtgagccaggtcaagcg
ccagccccaattgtggtaaaaggtgcgcaggggcctcctggtccgcctggacccccagga
tcccaagggctaccaggagaggcaggacaggaggggcttccaggtgagcctggtagtcct
ggtgacccaggtcctgatggtcctccaggatacagtggtccatctggaaggaaaggagac
cagggaccatctgggcagccaggtcagcagggtttacctggccctcctggtccagatggg
cttccaggtcctccaggtcctccaggtctgtcgtcagcagctcatggcttccttattaca
cgacacagtcagtctacagatgtaccgctatgcccaattggcacctctctcatctacaat
ggctattctctgctttacgtgcagggcaacgagagggcacatggccaggacctgggtacg
gctggaagttgtctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaacaac
gtgtgcaactttgcttcccggaatgactactcctattggttgtctactcctgaacccatg
cccatgagcatggctcctatccagggagaaaacatcaaaccctacataagcagatgtgct
gtgtgtgaagccccagctatggtgatagcggtgcacagccagaccatccaactgccatca
tgtccacagaactgggagccattgtggattggctattccttcatgatgcacactagcgca
ggtgcagagggctctggtcaggctctggcctcgcctggctcctgtctggaggagtttcgt
tcatctccattcatcgagtgccatggccgtggaacctgcaactactacggcaactcctat
agcttctggctggccaccgtcgaacagtctgaaatgttcaggaagccacagtctgagacg
ctgaaagcagggaatctccagacacgtgtgagtcgctgcattgtgtgtatgaagaggacg
taa
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