Ictalurus punctatus (channel catfish): 108267417
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Entry
108267417 CDS
T04658
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108267417
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108267417
09142 Cell motility
04820 Cytoskeleton in muscle cells
108267417
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108267417
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108267417
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108267417
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108267417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108267417
NCBI-ProteinID:
XP_017326953
UniProt:
A0A2D0R8N9
LinkDB
All DBs
Position
7:complement(21755195..21806923)
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AA seq
1680 aa
AA seq
DB search
MNKKLKSLQNLVAVLLFISLSIGVQQSESAACHGCGTGSKCDCSGVKGAKGDRGFPGQSG
HPGVPGFPGPEGPIGSRGEKGDDGPPGPPGPKGIRGPPGLPGFAGTPGIPGLPGSDGPPG
SKGIPGCNGTKGEKGFPGNPGFPGLDGSPGLRGDPGQKGEPGEVISMEIPGTSGIPGSIG
LPGPRGDPGPPGLPGPSGPQGPRGYNGPPGPPGPQGPKGNMGLNFQGPKGDKGETGLQGP
PGPPGQVDQLIGETDGVIHRGEKGDPGPPGPPGYPGPPGLPGPSDVKGEKGEPGEPGKRG
KPGKDGDPGPPGLQGAIGDPGDPGFPGRDGERGEKGERGLPGPPGVVTPPSLNQVGPKGD
PGIPGAPGRKGEPGLPGVQGPPGQPGQPGIGSQGLPGPPGYSGERGQKGDQGSPGASLPG
SPGRPGPQGFQGPPGPPGPPGISNGFENCLPGPAGLPGLNGEPGFPGEIGQKGEKGDTCV
NCFASGNLIPGPQGPPGPPGLPGSPGLPGFKGDRGSPGSPGLMGPPGLQGQQGSPGLSGQ
KGDPGDAIALDGMKGDKGDTGFPGPPGLPGRDGAPGRNGPPGAPGPKGAPGSLMLKGERG
PPGEPGLQGPPGDRGLTGAPGFGPQGPSGEKGFQGVSGRQGLPGPPGQKGEPGQTVSEKG
ATGPSGRDGEPGLPGNPGNPGQPGSPGFPGLPGQKGEPGLPGIGLPGPPGPKGFPGTAGT
PGSLGRPGPPGVDGLPGTPGFRGPKGEPGYGIPGPQGPPGLPGSKGFPGQKGDPGFPGNP
GAPGRPGIDGPPGYKGDSGLSGSPGAPGPQGPPGFGLPGLPGPPGLPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDPGSPGLSGPPGPPGLPGNPGNPGQDGLPGFPGQKGEMGVMGA
PGSPGNPGNPGVPGFPGAKGDNGQPGLQGNPGLMGTKGNKGEPGLRGPAGITDTSTVKGT
KGEPGLQGISGVPGPKGIPGLQGDPGIPGQDGRPGQPGPPGPKGDSGIPGTPGLPGPPGL
KGTMGEMGLPGPPGVKGNLGQPGRPGQPGSSGAPGFPGPKGDPGTPGFGQPGPQGPKGEP
GSPGIPGSAGIKGQQGPPGSPGIPGSSGAKGDPGLPGFQGAPGATGPKGLDGVPGAPGLA
GAPGRPGSPGPPGLSGAPGDKGQPGRDGIPGPAGLKGEPGIPGYGLPGPSGTPGMPGQKG
DPGFPGQPGSPGFPGPKGDIGPSGTIGSPGLQGPPGPPGQSIQGPKGNQGAPGPPGRGGP
PGPEGPRGPPGSGGVKGEKGYPGNPGSPGLSGQKGDTGPPGFLGPPGSPGTVGLKGDTGL
PGGIGFPGPKGQPGNPGVPGLRGDPGEPGRPGDPGEPGQAPAPIVVKGAQGPPGPPGPPG
SQGLPGEAGQEGLPGEPGSPGDPGPDGPPGYSGPSGRKGDQGPSGQPGQQGLPGPPGPDG
LPGPPGPPGLSSAAHGFLITRHSQSTDVPLCPIGTSLIYNGYSLLYVQGNERAHGQDLGT
AGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIKPYISRCA
VCEAPAMVIAVHSQTIQLPSCPQNWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFR
SSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRCIVCMKRT
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagttaaagagtctgcagaacctcgtcgccgtgctactcttcatatctctg
tccataggggttcagcagtccgagtctgcggcatgccatggttgtggaactggatcgaag
tgtgactgcagtggagtgaaaggcgcaaagggtgatagaggattcccaggtcagtcaggt
catccaggtgtaccaggattccctggaccagaagggccaattggatctcgtggagagaag
ggtgatgatggacctccaggaccacctggacctaaaggaataagaggacctcctggactt
ccaggatttgcagggacaccaggaattccaggtcttccaggatcggacgggcctccaggt
tcaaaaggaattccaggctgtaacggaaccaagggtgaaaaaggatttccaggaaatcca
ggtttcccaggtttagatggttcaccaggactacgtggtgacccaggacagaagggagag
cctggtgaagtcatctctatggaaataccaggaacatcaggaattccaggaagcatcggt
ctgccaggccccagaggagatcctggaccgcccgggttgccaggtcctagtgggcctcag
ggtccaagaggttacaatgggccaccaggtccccctggtccacaagggccaaagggaaat
atggggctgaacttccaagggccaaaaggagataagggtgaaactggcttacaggggcct
cctgggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcatcga
ggagagaagggtgaccctggaccacctggaccacctggatatcctggccctcctggatta
cctggtccatctgacgtgaagggagagaagggagagccaggagaacctggaaagaggggt
aaacctggtaaagatggggaccctggccctcctggacttcagggtgccataggagaccct
ggtgatcctggttttccaggaagagatggagaaagaggtgagaaaggtgagcgaggacta
cctggacctccaggcgtggtaacacccccatcactcaaccaagtaggacctaaaggagat
cctgggattcctggagcccctgggaggaaaggagagccagggctacctggtgtccaagga
ccaccaggtcagccaggtcagccaggaatcggaagtcaaggcctacctggcccccctggt
tattcaggagagcgaggacagaaaggagatcaaggatcgcctggagcttctcttccaggt
tctcctggtagacctggaccacaaggtttccaaggccctccaggaccgccaggacctcca
ggaatatcaaacgggtttgaaaactgcctcccagggcccgctggtcttccaggcctgaat
ggagaacctggtttcccaggagagataggccagaaaggtgaaaagggggacacgtgtgtg
aattgtttcgcaagtggcaacctcatcccaggaccacagggtccaccaggacccccagga
ctcccaggcagtcctgggctccctggttttaaaggagacagaggatccccagggagccct
ggtttaatggggccaccaggtttacaaggacagcaaggttcacctggactatccggacag
aagggtgaccctggtgatgcaattgcccttgatggtatgaagggagacaagggagacaca
ggattccctggccctccaggtctgcctggccgggatggagcacctggtcgaaatggacct
cctggagcacctggtcccaaaggcgcacctggttccctaatgcttaaaggtgaacgtggc
cctcctggagagcctggtctccaaggtcctcctggagaccggggccttactggtgcccct
ggatttggcccacagggaccttctggagagaaggggttccagggtgtgtcaggaaggcaa
ggacttcctggacctccaggtcagaaaggtgaaccaggtcagactgtctctgagaaaggg
gcaactggacccagcggacgtgatggagaacctggtctaccaggaaatccaggtaaccca
ggccaacctggctccccaggtttcccaggattacctggccaaaaaggagaacctggtctc
ccgggtataggcttgccaggcccaccaggccctaaaggattcccaggtactgcgggaact
cccggcagccttggcaggcctggacctcctggtgtggatggactgcctggtacacctggc
ttccgtggacctaagggtgaacctggttatggtatccctggccctcaggggcccccaggt
ttgcctggcagtaagggttttcccgggcaaaaaggtgatcctggattccctggaaatccg
ggtgcacccggccgacctggtatcgatggtccccctggctataaaggtgattctggtctt
tctggttcaccgggtgcacctggccctcaagggccccctggttttggtttacctggtcta
cctggaccaccgggacttccaggacctatgggcaatcctggttcccctggtttgaatggt
gagaaaggagaccctggttcgcctggactggatattccaggcttgcctggtgacccaggt
agccctggattgtctggaccacctggccctcctggccttcctgggaaccctggtaaccct
ggccaagatgggctacctggattccctgggcaaaagggagaaatgggcgtgatgggtgct
ccaggatctcctggtaatcctggtaaccctggtgttccaggatttcctggagcaaaaggt
gataatggtcagccaggtctgcaaggaaacccaggtttgatgggaacgaagggaaataaa
ggtgaaccaggtctaagagggccagctggtatcaccgatacttctacagtaaaaggaaca
aagggagaaccaggacttcaaggaataagtggagttccaggaccgaaaggtattcctgga
cttcaaggagatccaggtatccccggacaggatggacgccctgggcaacctggacctcca
ggtcccaagggagattccggaattccaggaacaccaggactccctggtcctccaggactg
aaaggcaccatgggcgagatgggattgcctggccctcctggagttaaaggaaacctaggt
caacctgggcgacctggacagcctggatcttcaggagcaccagggttcccaggaccgaaa
ggagaccccggaacgccaggatttgggcaaccaggacctcaaggacccaagggtgaaccc
ggctctcctggtatccccggatctgcagggataaaaggtcaacagggccccccaggaagt
ccagggatacctgggagctctggcgcaaagggtgatcctggcctcccaggattccaaggt
gcacctggtgctactggtcctaaaggtctggatggagtcccaggtgcccctggtctagca
ggagcacctggaaggccaggaagccctggcccacctggtttgtcaggtgcacctggagac
aagggtcaacctggtcgtgatggtattcctggaccagcaggattgaaaggagagccaggt
ataccaggttatggactcccaggtccttctggcactcctgggatgccaggtcagaaagga
gaccctggctttcctggccagcctggcagccctggattccctggaccaaagggtgatata
ggaccctctggtacaataggtagccctggtctacaagggccccctggtcctccgggtcag
tccattcaagggcctaaaggcaaccaaggtgctcctggaccaccaggaagaggaggccct
cctggcccagaggggccccgtggacccccaggttctggaggagtgaagggtgagaaaggc
taccctggaaaccctggatcacctggtttatctggacagaaaggagacactggaccacca
ggttttttgggcccccctggatctcctggaactgttggacttaaaggtgacaccggcctt
ccgggtggtataggattcccaggacctaaaggtcaacctggcaatcctggggttcctggc
ctgcgtggtgatcccggggagcctggtcgtccaggtgatcctggtgagccaggtcaagcg
ccagccccaattgtggtaaaaggtgcgcaggggcctcctggtccgcctggacccccagga
tcccaagggctaccaggagaggcaggacaggaggggcttccaggtgagcctggtagtcct
ggtgacccaggtcctgatggtcctccaggatacagtggtccatctggaaggaaaggagac
cagggaccatctgggcagccaggtcagcagggtttacctggccctcctggtccagatggg
cttccaggtcctccaggtcctccaggtctgtcgtcagcagctcatggcttccttattaca
cgacacagtcagtctacagatgtaccgctatgcccaattggcacctctctcatctacaat
ggctattctctgctttacgtgcagggcaacgagagggcacatggccaggacctgggtacg
gctggaagttgtctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaacaac
gtgtgcaactttgcttcccggaatgactactcctattggttgtctactcctgaacccatg
cccatgagcatggctcctatccagggagaaaacatcaaaccctacataagcagatgtgct
gtgtgtgaagccccagctatggtgatagcggtgcacagccagaccatccaactgccatca
tgtccacagaactgggagccattgtggattggctattccttcatgatgcacactagcgca
ggtgcagagggctctggtcaggctctggcctcgcctggctcctgtctggaggagtttcgt
tcatctccattcatcgagtgccatggccgtggaacctgcaactactacggcaactcctat
agcttctggctggccaccgtcgaacagtctgaaatgttcaggaagccacagtctgagacg
ctgaaagcagggaatctccagacacgtgtgagtcgctgcattgtgtgtatgaagaggacg
taa
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