Ictalurus punctatus (channel catfish): 108267550
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Entry
108267550 CDS
T04658
Name
(RefSeq) DENN domain-containing protein 4B isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108267550
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
108267550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
SPA
Motif
Other DBs
NCBI-GeneID:
108267550
NCBI-ProteinID:
XP_017327214
Ensembl:
ENSIPUG00000003493
UniProt:
W5UCY2
LinkDB
All DBs
Position
1:14819770..14856678
Genome browser
AA seq
1488 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLAGDSAPPDEECQQRGGRGMEPISDLAVIARGLGEEVPEGFTC
IEKTLGGHPAELSAGLINNPHMFLCYRRSHDKPPIVELGVLYDGKEAVKQGWHVIETTPY
SRCASLSSGGPATHKTFLMFRRAPDSQALNTLGVTDISLLMPSKGEVAPHTFCKVDKNLN
TGMWGPALYLCYKRAVVKANALVYEAGLISRYPEEDLESFALPDSVPVFCLPMGVTVESW
PLNTKYQLPVFSTFVLTSASGDKVYGAAIQFYEAYPREALSERQRLRLGLVSVVDHRPIT
NRMVQVKKSVCVLSHWPFFTVFQKFLTFIYRYSISGPHVLPIEKHISSFLHNVPFPSPQR
PRILVQLSPYDNLLLCQPVSSPLPLSGASFVKLLQNLGPENACTLLLAVLTEHKLLLHSL
RPDVLTSVSEALVSMTFPLRWPCPYIPLCPLRCADVLCAPMPFIVGVHSSYFDLYDPPSD
VVCVDLDTNTIFQSEDKKPLSWKSLPRKHGKILLSSLTHLHKTLEKSCTLGHEEATLEFL
LTDYDLIYGRQKQLELEIQEAFLRFMSCLLRGYRSYLLPITQAPSDRTTDCSSLFNLQGF
LKSRDRTQQKFYSLLTKTQLFTQFIEECSFVSDRHACLEFFDECVQKVDVEKPEEVRLID
LDETHSGEHTVFIMPPEEPQEPDGSECPAPYSYETFPVLHPELFDRPLDQLRTTAKGSAP
NSPAPRRTKQEIKLAQKFAQKYSAVPDMWSKCLLGHCYGLWFIYLPTFVRAESTKVRALQ
TAYEVLKHMETRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLLEMKKAGITPNAITYGYY
NKAVLESKWPSTNQGGRLRWAKLRNVLLAVAQFRQPIKHRQKSNSVSSTQGNSNCNLHLH
STLKRQTSWSGLSESSSHESLTGPITKSNSLSSMRPNKSALVRKAMLQNKSTDDPASRKP
PISPRDMVTPSPVPPDDFVRVRRSEVCLSTFYKECEEPDTDCRCQPTERDGRPAEQRETL
NRKAVDENSNNVLSPNRGLAGKLQQLLTPTRHRNSSRRAASVDERRPAANGPSRKSSEQR
QSRKSQVTETLLKARERLYNATSESSLSVGSDIDLSDPPISGFSLRKSWDSTQEGVGLEV
SMSSCTLCRSCNSLVYDEEIMAGWTSDDSNLNSSCPFCSATFVPLLNAEICELGPVSSSQ
YHNNQNMEDQVESAVRPPSGHDGFLQHLYNGETEHDSSSETSTYSESSCNTLSSRLGGSP
QVTVAYLTPLVLRKELESLLENEGESVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLLQL
VRASPLASQISQSPENTSVRVRLLWDTLVPDTDYWPPLYILWRIHSGVPMRNYAWRRHNH
PFTLSFLEEVLRCVGMNEVHKAITFFLDTIAKQQGTPRIQRSLYREFLFLTLAAMGKDHV
GAFDKRYKAAYARLSSSLGHDELRRKRAQPPSPKAVDCRRCFLVPLDC
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggagaaatgtcctcagttggtggattactttgtggtggcggggctggcgggc
gactcggctccaccagacgaggaatgtcagcagagaggtggccgtggcatggagcccatc
agcgacctggctgtgatcgcccgtggccttggagaagaggtgcccgagggcttcacatgc
atcgagaagacattggggggccatccagctgagctcagtgccggcctcatcaacaaccca
cacatgttcctctgctaccgacgcagccatgacaaaccgcccattgtggagctcggtgtg
ctgtatgatgggaaagaggccgtgaagcagggttggcatgtgatcgagacaacaccgtac
agccgctgtgccagtctgagctcaggagggcctgccacccataagacgttcctcatgttt
cggcgcgcccctgactcacaggccctaaacacactgggggtgaccgatatctcattactc
atgcccagcaagggagaagtggcaccacacaccttctgcaaagtggacaaaaacctgaac
actggcatgtggggcccagcgctgtacctgtgctataagcgggctgtggtgaaagccaac
gccctggtgtatgaggcagggctgatcagccgctaccctgaggaggatcttgagtcgttt
gcgttgccggactcagtccctgtcttctgtctgcccatgggtgtcactgtagagagctgg
ccactgaataccaagtaccaactccctgtcttctccacctttgtcctcaccagcgcaagt
ggagataaggtgtatggagctgctatccagttctacgaggcgtacccaagggaggctctc
tctgaaagacagcggttgcggctcgggctggtcagtgttgtggaccaccgacccatcact
aaccgcatggtgcaggtgaagaagagcgtgtgtgtgctctcccactggccgttcttcacc
gtcttccagaagtttctcaccttcatctatcgctactccatctctggacctcatgtgctg
cccattgagaagcatatctcaagtttcttgcacaacgtacccttcccttcaccacagcga
ccacgcattctggtacagctctctccatacgacaacctactactgtgccagccagtgtcc
tcacccttaccactgagtggtgccagctttgtgaaactcttgcagaatctggggccggag
aacgcatgtaccctgctgttggctgtccttactgagcacaagctgctgctacattccctc
cggccagatgtgctgacctccgtcagtgaagccctggtgtcgatgacgtttccattgcgt
tggccctgtccgtacatcccactgtgcccgctacggtgtgcagatgtgctgtgcgccccg
atgcccttcatcgtgggcgttcactccagctattttgacctgtacgaccctccttcagat
gtggtgtgtgttgaccttgacaccaacactattttccaatcagaagacaagaaacccttg
tcgtggaaatctttacccaggaaacatggaaaaatcctgctcagctcactcacccacctg
cacaaaactttggagaaaagctgtaccctcggtcatgaagaggcaaccctagagttcttg
ttgacggattatgacctgatctatgggcgtcaaaagcagctggagctggagatccaggag
gccttcctgcgctttatgagctgcctcctcagaggctatcgctcctacctcctgcccatc
acccaggctccctcagacagaaccactgactgcagctccctcttcaatttgcaggggttt
ctaaagtctcgagatcggacacagcagaagttttattccctcctaaccaagactcagtta
ttcacgcagtttatagaggagtgctccttcgtcagcgacagacacgcatgccttgaattc
tttgatgagtgtgttcagaaggtggatgtggagaagccagaggaggtgaggctgatagat
cttgatgagacgcacagtggagagcacacagtgtttataatgccaccagaggagcctcaa
gaacctgatggctctgaatgccctgcaccctacagctatgagacgtttcctgttctgcat
cctgagttgtttgaccggcctctggatcagctccgtaccacagcgaagggaagtgccccc
aacagtcccgcccctcgccgcaccaaacaggagatcaagctggcacagaaatttgcgcag
aagtactcggcggtaccagacatgtggtccaagtgtctactgggccactgttatggtctg
tggtttatctacctgcccacatttgtccgggctgagagcaccaaggtgcgggcactgcag
actgcttatgaggtgctcaagcacatggagacacggaaggttgtgctacctgacgaggtg
tgctacaggatcctaatgcagctatgtgggcagtacgggcaacctgtgcttgctgtcagg
gtcctgctggagatgaagaaagcaggaatcactcctaacgccatcacgtacgggtactac
aataaggctgtgctggagagcaagtggccatccaccaatcaaggaggtcgccttcgatgg
gccaagcttcgcaacgttcttttggctgtggcacagttcaggcaaccaatcaaacacagg
caaaagagcaactctgttagctcaacacaaggtaactccaactgtaatcttcacctgcac
tccactcttaaacgccagaccagctggagcggtttgagtgaaagttcaagccacgaatcg
ctgactggtcccatcactaagagcaacagtctaagcagtatgcgacccaacaaatctgcg
ttagttaggaaagcaatgttacaaaacaaaagcactgatgaccccgcctcccgcaaacct
cccattagtcctcgggatatggttacaccctccccagttccccctgatgactttgttaga
gtgcgacggagtgaagtctgcttgtccaccttttacaaagagtgtgaagagccagataca
gactgcaggtgccagccaaccgagagagatggcagacctgcagagcagcgagaaacgctg
aatcgcaaggcagtagatgagaactccaataacgtgttgtccccgaatcgtggactggca
ggtaaactgcagcagcttctcacacccacgcgtcaccggaactcatcacgccgcgcagcc
agcgtggacgaacgacggcctgccgctaacgggccgtcacgcaaatcatctgaacagaga
cagtctcgcaaatcacaggtgaccgagacgctgctgaaagccagagagcgactatacaat
gccacctcagagagctccttgtctgtaggtagtgacattgacctgtcagaccctccaatt
tctggtttttcactcaggaagtcatgggattcgacacaggaaggggtggggcttgaggtg
tcgatgtcgagctgtactctttgccggagctgtaactcgctggtgtatgatgaggagatc
atggcaggctggacatctgatgactccaatcttaactccagctgcccattttgttcagca
accttcgtaccactgcttaatgcagagatttgtgagcttgggcctgtcagcagcagtcag
tatcacaataaccagaacatggaggatcaggtggagagtgcagtgaggccccctagtgga
catgatggctttctgcaacatctgtataacggtgagacagagcatgactccagttcagag
accagcacatactccgagagcagctgtaatactctaagctcgcgtttgggtggctcccct
caggtgacagtggcgtacttgacccctctggtcttgcgtaaggaactggaaagtcttttg
gagaacgaaggagagagcgttctctctcaggtccaattactggacagccactccatcctc
ttctggaatctggtgtggtacttcactcgccttggcctccccagcaatctgctgcaactg
gtgcgggcctctccactagcatcacagatttcacagagccctgagaatacttcagtaagg
gtgaggttactgtgggacactttggtgcctgatacggattactggcctcctctctatatc
ctctggagaatacacagtggagtgccgatgcgtaactacgcatggcgcagacacaaccac
cccttcactctgagctttctggaggaagtactgcgctgtgtcggtatgaatgaggtacac
aaggccatcacgttcttcctggacactatcgccaagcagcaaggcactccccggatacag
aggagtttgtacagggaatttctgtttcttactttggctgctatgggcaaagaccatgtt
ggtgcttttgacaagaggtacaaggctgcttacgccaggctgagtagttccctgggccat
gatgagctgaggaggaagagagctcagccaccaagccccaaagctgtggactgtagacgc
tgtttcctagtgcccctggactgctga
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