Ictalurus punctatus (channel catfish): 108267599
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Entry
108267599 CDS
T04658
Symbol
gigyf1a
Name
(RefSeq) GRB10-interacting GYF protein 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108267599 (gigyf1a)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108267599 (gigyf1a)
Surveillance factors
Other surveillance factors
108267599 (gigyf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
TRI4_N
TT_ORF1
RR_TM4-6
Motif
Other DBs
NCBI-GeneID:
108267599
NCBI-ProteinID:
XP_017327329
Ensembl:
ENSIPUG00000000418
UniProt:
A0A2D0R9S8
LinkDB
All DBs
Position
7:complement(22501240..22540812)
Genome browser
AA seq
1009 aa
AA seq
DB search
MTAETLNFGPEWLRALSSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYVKDNKIPEDM
QDKVFAAILQDEPQQPLALVPLTEEEQRNFSMSVNSVAVLRLMGKGGGAIPASVARGRGS
VRGGRGRGRGESGFYQRSTEDGEVGFSRSVREIHRSQSWDDRGERRFEKPLRREGLRVGF
EEVASGGRKEFMRSDSDNWRTLREEHEQEEGGDPGGSWRLAGSRRDDGGPRSAGWREHGE
VRRKKFDFGSEGGRRRAGSEGAEDERDGLPEWCTDEEEGEMGTFDSSGAFMPIKKGSKDP
IPEEEFDFQGLEDEDECGTDGENKDGSFGDKAERDETDSAAVCEVEVKSLPPSSPSSMSL
IAPQAEPMPTAAPTCLEDPQPIPAMPSKMPSEVLSDPVSELSPSASSSLPSSPPSSSSAA
TDLPPTGGDPEDDEGMKHLQQEAEKMVAALQDTSLEEECFTQTLQESRNTAAALPLSHDS
AMKWFYKDPQGEIQGPFSTVEMCEWFQAGYFSMSLLVKRGCDEGFQPLGDVIKMWGRVPF
APGPSPPPLLCNLDQDRLKKQQEIATAALYQQLQQHQFFQLINRKTEHKEKPSFRCGEQG
MMPSMNRSLSVPDTGSMWDMHTSASQPTGGEASLWDLTMNSSTQGPTLEQLQKLQERREA
ELRAKREEEERKRRDEKRRQQQEEQKRREEEELFRRKQQELLMKLLQQAPRQGAASTGSG
WSTGPVPGLGKQGKSINSLEIQQDTERLYKQQQRAPQQRWATESLWSSSGMDGKAAGGSS
PSGGSMGVWDEALKNQSALRSGMGLKNSRSSPSLSDQYMMMNRRKRTEDEDRLLKLLQGM
KAQDGFTTWCEQMLHALNTSANNSNSSLDVATIVAYLKEVESPYEVLDFIRSYLGDTVEA
KEFAKQFLERRAKQKANHQRQQQLSKEVGGLTMNSFPLQDSMRGMNPAALQSMFQAVHSG
KGGMGYDQAGKLKKKQPMMLHSDPSILGYSFHGAADRMSLSEMEMVEDY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagagacactcaatttcggcccagaatggctccgtgcactttccagtggaggc
agtgtgacttcccctcctccctctcccgctatgccaaagtacaagctggccgagtatcgc
tacggccgagaggagatgttagcactttatgtcaaagacaacaagatcccagaggacatg
caggataaggtgtttgctgctattctgcaggatgagcctcagcaacctctggcactggtg
cctctaactgaggaagaacagcggaatttttcaatgtctgtcaatagtgtggctgtgctg
aggcttatgggtaaagggggtggggccattcctgctagtgtggcccgtggcagaggcagt
gtgagaggtggccgaggcaggggccgtggagagagtgggttctaccaaagaagtactgag
gatggagaggtgggcttcagtaggagtgttagagagatccaccgtagccagagctgggac
gaccggggtgagaggcgctttgagaagcctctgcgtagggaggggttgcgtgttggcttt
gaggaagtggcctctgggggaaggaaagagttcatgcgttcagacagtgataactggcgc
acactgcgagaggagcatgagcaggaggaaggtggagacccaggaggcagctggagactg
gctggctcacgtcgagatgatggtggcccccgttcagcaggctggcgggaacatggtgag
gttcgccgtaaaaagtttgattttgggagtgagggaggaaggaggagagcaggaagtgaa
ggagcagaggacgagagagatggactgccggagtggtgcactgatgaagaagaaggagag
atgggtacctttgactcctctggagcattcatgcccatcaagaagggttctaaggaccct
attccagaggaggagtttgattttcaaggtctagaagatgaggacgagtgtggtactgat
ggagagaacaaagacggtagttttggagataaagccgagagagatgagaccgactctgca
gctgtgtgtgaggtagaggtgaaatctctccctccctcctctccttcctccatgtccctc
attgctcctcaggccgagcccatgcccactgctgcccccacttgtctggaggatcctcag
cccatacctgccatgcccagcaagatgccaagtgaagtgttatcagatcctgtgtctgag
ctgagtcctagtgcctcctccagtctgccttcatcccctccttcctcttcctctgctgct
actgacctcccaccaacggggggcgaccctgaggatgatgagggcatgaagcacctgcag
caggaggcagagaaaatggttgcagctcttcaggacacatctctggaagaagagtgtttc
acccaaacactgcaggagagcagaaacactgcagccgccctacctctctcccacgactct
gccatgaagtggttctacaaagacccacagggagagattcagggcccctttagcacagtg
gaaatgtgtgagtggttccaggcaggctacttcagcatgtctttgctggtgaagcgtggt
tgtgacgagggcttccagcctctgggagatgttattaagatgtgggggcgggtgcccttt
gcacctggcccctccccaccgcctctgctgtgtaatctggatcaggacaggctgaagaag
cagcaagagattgctacggctgctctctaccagcaactgcaacagcatcagtttttccaa
cttattaacagaaaaacggagcacaaagaaaagccatctttcaggtgcggagagcagggt
atgatgccttcgatgaacagatcactgtcagtgccagatacagggtccatgtgggatatg
catacctcagcctcacagccgacaggtggtgaggccagtctatgggacttaacaatgaat
tcttctactcagggtccaactcttgaacagcttcagaagctccaggagagaagagaggct
gaactcagggctaagcgggaagaggaagagagaaaaagaagggatgaaaagaggagacag
cagcaggaagaacagaagaggagagaggaggaagagctcttcaggcgcaaacagcaggag
ctgctgatgaagttactgcagcaggctccacgtcagggggctgccagcacaggctcaggc
tggagcacaggcccagtgcctggactggggaagcagggcaagtccatcaactcgctggag
attcaacaggacactgagagactctacaaacagcagcaaagagccccacagcagagatgg
gctacagagagtctgtggagttcttctggcatggatgggaaggcagctggtggcagcagt
ccctcaggaggcagcatgggggtttgggacgaggccctaaagaaccagagtgccctccgc
agtggcatgggcttgaagaacagccgcagtagcccctcactcagtgatcagtacatgatg
atgaatcgccgcaaacggactgaggatgaggaccgcttactgaagctcttgcagggtatg
aaggctcaggatggctttaccacatggtgcgagcagatgctacatgcccttaacacctct
gccaacaactccaactcctccctggatgtggcaactattgtggcatatctgaaggaggtg
gagtcgccgtacgaggtactggactttatccgctcctatctaggtgacactgtggaagcc
aaagagtttgccaagcagtttctggagcgccgtgccaaacagaaagccaaccatcagagg
cagcagcagctctctaaggaggtgggtggactgaccatgaacagctttcctctgcaggat
tctatgagaggtatgaaccctgctgctttgcagtccatgttccaggcagtgcattctggg
aagggagggatgggctatgaccaggctgggaaactgaagaagaaacagcccatgatgctg
cactctgatcctagcattttaggttactcattccatggtgcagcggatcggatgagcctg
agtgagatggagatggtggaggattactga
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