Ictalurus punctatus (channel catfish): 108267737
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Entry
108267737 CDS
T04658
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108267737 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108267737 (chd8)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108267737 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
Chromo_MIT1
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
108267737
NCBI-ProteinID:
XP_017327592
Ensembl:
ENSIPUG00000019891
UniProt:
A0A2D0RAK5
LinkDB
All DBs
Position
7:complement(4208315..4292178)
Genome browser
AA seq
2544 aa
AA seq
DB search
MADPIMDLFDDSPLFNLDSLPEDAFSQGSSDPVEEALKLALGQVDPPLDSDSAPEASIPV
LSDSAQAPLTTTTTISSVPLKTQPVSQVPLSSVASAPVPIQTITQTSVSMASSSGGSTAV
LMSSPLAVSGSQVAPQHLITQQAAGQAAPKIVILKSPQGQAQVLQSVTGAAGTAGKLTIA
RVVTGAPVRPGMSIVSGGTVLNATQSVQGPVKVGTGVQRLVQTPNGPVKQVLLTSLPQTH
LQLPTQTQITQAQTEMPKLQLQTQVQPSQVPIQAQVQEQVAATTGSTVAAQTQGVTLSTV
AQQVEPKRITLVLQPSSQGGTNQVGTMTVGGNPSAGAGQQGQQSRLVLGSLPGKLVLQGG
QLAALTQARAGQTGAQPKVLTIQLQVQQQPNQQGAKFQLVSGTANASGCHQVVQLSQGQG
VQRLAVPVKLLLQQQTSSASCSGGAVSVVKVINTSTGSSANSTTASQGLRIVKATEPLRK
VETLCKQEKANRIVAEAIARAKARGERNIPRVLSQDEFPARQTSTDIDGVASPTGAKKKS
AGGNKKKCPALGAATVKATVGEKKVKVKSTGSAVAGGGGGCKSKGKTKPNTITLVGGKKR
KRNASSDHSDGELNSPATPLTQEENLSQMRRSNRQVKRKKYTEDLDIKITDDEDEQGEDV
DVTTPAVILSTGHSQPMGTPFQGLEGDGLPSMQFFVENPSEEDAAIVDKVLSMRLTKKEV
SPGQYASVEEFFVKYKNYSYLHCEWASLEQLERDKRIHQKLKRFKAKQSQMRTFFQEDEE
PFNSDYIEVDRILDESHSVDKENGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVEEFKR
IQSRQPRIKRPPRPPASAWKKLEQSREYLSGNTLREYQLEGVNWLLFNWYNRQNCILADE
MGLGKTIQSIALLSEVFATGVQGPFLIIAPLSTITNWEREFSTWTEMNAIVYHGSLASRQ
MIQQYEMYCKDDKGHLIPGAYKFDALITTFEMVLSDCPELREIYWRCVIIDEAHRLKNRN
CKLLDSLKMLNVEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSETEFLREFGNLKTEEQ
VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGAN
HNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVAELREVYNASAPDFHLQALVRSAGKLV
LLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLLHKRYLYERIDGRVRGNLRQAAIDRFS
KSDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMLDKASLKLGLDRAVLQSMSSNKDNNVNGVHQFTKKEIEDLLRKGAYAAI
MDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWQ
KWAQKADIDLDTINRKNTLVIDTPRVRKQTRQYSSLRGESGELSDLDSDDEYPPQNSRQA
RASRRADRHSGGGYGRTDCFRVEKHLLIYGWGRWHDILSHARCKRRLGEKDVETICRVIL
VFCLLHYRGDENIKSFIWELITPPENGQEPHTLLNHSGLSIPVPRGRKGKRVKAQSSFDV
QKAEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHVNSILEGADSR
DIDIWLPEMEQQDVPSGWWDTEADRCLLIGVFKHGYEMYTTMRADPCLCFLGRCGRPDDQ
EIKAEQHSADPDLRDGGAYDKFSEDPEFKPVIRHSKEMYEETDPRNMDEFFVEDHSTYST
VVPVEAQSSGSMGACYWPTSSTLTARLRRLITAFQRSYRREQLKMEAAEKGDRRRRRCEQ
ATKLKELARQERQQRWTRREECDFYRVVSTFGVERIKTEVGTQEGREAKLEWTRFRTHAR
LDKKTDESLNRYFHCFVAMCRRVCHLQPVCGEESLDLSQSLAPITEERASRTLYRISLLS
RLRELVLPHPSLEERLALAPPSSDLPNWWCTPQHDHELLLGAASCGVSRTEHSIFSDSQF
SFIQAHHEYIQKQQACLAAQTLTHSPSQQGDNVREVKSGDENQVLESICSSALPALPFSH
SEGKRGEQQGWSWNKIKERGPRELGTKQAETDGGPSDSDSDSDSESSTSSHRSPSSDVSG
DSDAERDEQEPLKICDADEENSTYSFTPSQDGAPLETLSDPLRVDWPKDRVLINRIDNLC
TLVLTGHWPSGRRYTSDPQLTLAYDEQGLGDDLGYTRISRKGNSTHSGQDGEETEFTVKL
LKEEGLKLTFSKQALIPNGSARVSSGRRRRRDQESSDMEGVLSAPRKRDLPNWLKENPEY
EVEGDMLELLVNRTKRKRRKKRTEKEQAPTGSERVKVIDMKTGKKVQYGGLYGPALQDLK
EYLEENPHHAVAPEWSDTVRNSGFLPEHFFHRLLTLHTEVSRQSHNYLTNPSAQTDPHLE
EGENETLVSDGAYIMDDEDLDSSALTTHHFLTSTYDAKMEAGSLDMDKGDALSPIGYDSS
DREAILDDVIMAPKNSDSSSCSED
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctgtttgatgattcacccctgtttaacctggattccctg
ccagaagatgctttttctcagggttcctcagacccggtagaggaggctctgaagttggcc
ctcggccaagtggatcccccattagattcagattcagccccagaagccagtatccctgtc
cttagtgacagtgctcaagcaccactaacaaccacaacaaccatctcttctgttccactt
aagacgcaaccagtaagccaggtgcccctttcatctgttgcttcagctccagttcccatt
cagacaataactcagacttctgtttccatggctagtagtagcggtggttcgactgcagtt
cttatgagttcccctttggctgtgtcagggtctcaagttgctccccaacaccttattaca
caacaggcagcagggcaggcagccccaaaaatagtgattctgaagagccctcagggtcaa
gcccaagtactacagagtgttacaggagctgcgggcactgctgggaagcttaccattgca
agagttgtgacaggtgcacctgtaagacctggaatgtccattgtctcaggagggacagta
ttaaatgctacacagtctgtgcagggaccggtaaaggtggggacaggtgtccaaaggttg
gtacagacacctaatggacctgtgaaacaggtgctactgacctctttgccccagacacac
ctccagttacctacacagacacagattacgcaagcacagacagagatgccaaagttgcag
cttcagactcaagtacagccgtcacaggtgccgatacaggcacaggtccaagagcaggtt
gctgctacaactggaagtacagtggcagctcaaacgcaaggtgtcaccctgtcgacagta
gcacaacaggttgaacctaaaagaatcacactggtgctgcagccgtcttctcagggtggg
acaaaccaggtcggcacaatgacagttggtggcaatccatcagcaggagctggacaacag
ggccagcaatccaggcttgtattgggctctctgccggggaaattagtgcttcagggtggc
cagttggcagctcttacccaggctagagcaggccagacaggggcacaaccaaaggtgctc
accatccagcttcaagtacagcagcagcccaaccaacagggagccaagtttcagctcgtt
tctggtactgcgaatgccagtggctgccaccaagttgtccagctttctcaaggccaggga
gtacaaagactggcagtgcccgttaaacttttgctacagcaacagacaagctcagcttct
tgttctgggggtgctgtttccgtggtgaaggtcatcaatacctcaactgggtcttctgct
aactccacaactgcctcgcagggtttacgtattgtcaaggccactgagcccttgcgaaaa
gtggagactctgtgtaagcaggagaaagccaatcgaattgttgccgaggccattgctcgg
gctaaagcccgtggtgagcgaaacatcccacgggtgctcagtcaagatgaatttcctgcc
agacagacatccactgacattgatggtgttgcaagtccaactggtgccaagaagaaaagt
gcaggagggaacaaaaagaagtgccctgcattgggtgcagcaactgtgaaagctacagtt
ggagagaagaaggttaaggtgaaaagtactggatctgcagtggctggaggaggtggaggc
tgtaagagtaaagggaaaacaaagcccaacaccatcactctggtaggtggtaaaaaaagg
aaaagaaatgcatcttcagaccattcagatggagaactgaactctcctgccacacccctc
acgcaagaagaaaatctgtctcagatgagacgttctaatcgtcaggtgaaaaggaaaaag
tatacagaggatttggatattaaaatcacagatgatgaagatgagcaaggtgaagatgtg
gatgtgaccacaccagcagtcatattgtctacaggacattctcagcctatggggactcct
ttccaagggctagaaggggatggccttcccagcatgcagttttttgtggaaaacccaagt
gaagaagatgcagcaattgtggataaagtgttgtctatgcgccttaccaaaaaggaggta
tctccaggccagtatgccagtgtagaggaattctttgtcaaatacaaaaactactcgtac
ttgcactgtgaatgggccagtctggaacagcttgagagagacaagaggatccaccagaag
ctgaagagatttaaggctaaacagtctcaaatgagaaccttcttccaagaggatgaggag
ccgttcaattcagattatatagaagtggaccgcatcctggatgaatcccatagtgtggac
aaagaaaacggagagccggtgatatactacttagtgaagtggtgctctctgccctatgag
gatgccacgtgggagctgaaagaagatgtagatgaagggaaggtggaggaattcaaaagg
atccagagtcgccaacccagaatcaaaagacctcctcgcccacctgcaagtgcatggaag
aagttggagcaatcacgagaataccttagtggaaacaccctgcgagagtatcagctagag
ggagtcaactggctacttttcaactggtataacaggcagaattgcattctggcggatgag
atgggtcttggtaagactatccagtcaatagccctactgtctgaagtatttgctactgga
gtccagggaccctttctgataattgcccctctctccaccatcacaaactgggaaagagaa
ttttccacatggacagaaatgaacgctattgtctatcatggcagcctggccagcagacaa
atgatccagcagtatgagatgtattgcaaggatgataaggggcacctcattccaggagct
tataaatttgatgctctgatcacaacctttgagatggttctgtctgactgcccagaactg
agggagatctattggcgttgtgtgatcattgatgaagcacatcgcctgaagaacagaaac
tgcaagctgcttgacagtctcaagatgctaaatgtggagcataaagtgctgttaacaggc
acacctttgcagaatactgtggaagagttgttcagtctgttgcacttcttagaacctgca
cagttcccttcggagacagagttcctgcgtgaatttggtaatctcaaaacggaggagcag
gtgcagaaattgcaggctattctgaaacccatgatgctacgcagattgaaggaggatgtg
gaaaagaacttggcaccaaagcaggagaccattattgaggtggagttgactgatgtgcag
aagaagtactaccgtgctattctagagcgtaacttcagcttcttgagcatgggagctaat
cacaacagcaatgtccccaatcttcttaacaccatgatggagctccgcaaatgctgcaac
cacccttatttaatcacaggtgctgaagagaaaatagtggctgaacttagggaggtgtac
aatgcctcagctccagacttccaccttcaggccttggtgcgctcagcagggaaactggtc
cttctggataagttgctgcctcgtctcaaggctggtggacacaaagtgcttattttctcc
cagatggtgcgctgtctcgacattctagaagattatctcctccacaagagatatctctac
gaacgcattgatggtcgagtaagaggaaaccttcgtcaggcagccatcgatcgcttcagt
aagtcagactctgaccggtttgtcttcttgctgtgtacccgtgctggaggactgggtatt
aacctgactgctgctgacacttgcgttatattcgactctgactggaacccacagaatgac
cttcaggcccaggcccgttgccatcgtattggccagtccaaggcagttaaggtgtatcgt
ctcatcaccagaaactcatatgaacgggagatgttggacaaagctagtttgaagttggga
ctggatagggctgtgcttcaaagcatgagtagcaataaagacaataatgtcaatggggtt
caccagttcaccaagaaggaaattgaagatttgctaagaaaaggggcttatgctgctatt
atggacgagaatgatgagggcagccgtttctgtgaagaagacattgaccagatccttcag
aggagagccaccactatcaccattgagagcgaaggcaagggatccaccttttctaaggcc
agctttgtggcatctgaaaataggactgacattgctctggacgacccggaattttggcag
aagtgggcccagaaagcagacattgacttggacaccataaataggaagaatacccttgtg
attgatactccacgtgtgcggaagcagacacgacagtactcgtctcttcgtggggaaagt
ggtgaactttcagacttggacagtgatgacgagtatccaccccaaaattctcggcaggct
cgagcctcacgccgtgctgaccgtcactctggtggtggctatggccgcactgactgcttc
agagtggagaaacacctgctgatttatggctggggacgttggcacgatatcctgtctcat
gctaggtgtaagcgtcgtcttggggaaaaggatgtggagaccatctgcagggtcatccta
gtcttctgtctgctacattaccgtggagatgaaaacatcaaaagctttatatgggagctc
atcacgcctccagagaatggccaggaaccacacacactcctcaaccactctggtctgtcc
attcctgtgcctcgtggaaggaaagggaaaagagtcaaggctcagagctcttttgatgtg
caaaaggcagagtggatccgcaagtataacccagatacacttttgttggatgacagctat
cgcaagcacctcaaacaccagtgtaacaaggtattgctgcgagtacgtatgctgtattac
ctgaaacaggaagttattggagaacatgtgaattctatacttgaaggcgctgacagcagg
gatattgacatttggctgcccgaaatggaacagcaggatgttccatcaggctggtgggat
acagaggctgatcgttgtttgcttatcggagtgttcaaacatggatacgagatgtacact
acaatgcgtgctgatccctgtttgtgtttcctggggagatgtggtcgtcctgatgaccag
gagatcaaggcagaacagcactcagcagatccagatttgagagatggaggtgcctatgac
aagttttcagaggatccagagttcaaacctgttataagacacagcaaagaaatgtatgaa
gagactgaccccaggaacatggatgagttctttgtggaagatcactccacatattccact
gttgtgccagttgaggcacaatcctcaggatctatgggagcctgttactggccaacaagc
tccaccctcacagctcgactacggcggctaatcacagcattccagcgcagttacagacga
gaacaactcaagatggaggcagctgaaaaaggagatcggcgacgccggcgctgtgaacag
gccaccaagctcaaagagcttgcgcgacaagagcgacagcaaaggtggactcgtagagag
gagtgcgacttttatcgagtggtgtccacatttggtgtggaacgcataaagactgaggtg
ggaacccaagagggtagggaggccaaactggaatggacacgtttccgcacgcatgcaaga
ctagacaagaaaactgatgagagtcttaaccgatacttccattgctttgtggctatgtgt
cgcagggtttgtcacttgcagcctgtctgtggcgaggaatctctggacttgtcccagtca
ctagcacccatcactgaggagcgagcctcacgaacgctctaccgaatcagcctgttgtcc
cgcctacgtgagcttgtgcttcctcatccctccctagaggagcgccttgccctggcacca
cccagctctgacctacccaactggtggtgtaccccacagcatgatcatgaactgcttctc
ggtgctgccagctgtggcgtaagccgcacagagcattccatattctcagactcacagttc
tcctttatccaagcccatcatgagtatatccagaagcagcaagcatgccttgctgcacaa
accctcacacacagcccatcacaacagggagacaatgttcgagaagtaaaaagtggtgat
gagaaccaggttttggagtccatttgctcatcagcccttccagccctaccattctctcac
tctgaaggcaaaaggggagaacaacaaggctggtcctggaataaaatcaaagagaggggg
cccagagagcttggaacgaaacaagcggagacagatggagggccttcagactcggattct
gattctgattctgaatcatctacctcttcccatcgatctcctagttcagatgtcagtggg
gacagtgatgcagagagagatgagcaggaaccactgaagatctgtgatgcagatgaagag
aacagcacctactcattcactccatcccaagatggtgctccactagaaacactcagtgac
ccactcagagttgactggcctaaggatcgtgtattaataaaccgaatagataacctttgt
actctggttctgacggggcactggccatctgggcgacgatatacctcagatcctcagcta
actctggcatatgatgagcaagggcttggagatgacctaggctacacccgtatatcccgc
aaaggcaacagtacccactctggacaggatggagaagaaacggaatttactgtcaaactc
ttgaaagaggaagggctgaaattgaccttctccaaacaggctctaatacctaatgggtca
gcaagagtgtcaagtggacgtcgaaggcgtagagatcaagagtcatctgatatggaggga
gtactcagtgcccctcgtaagagggacctgcccaactggctcaaagaaaatcctgaatat
gaagttgagggtgacatgctagagctgttggtgaacaggaccaaaaggaaaaggaggaag
aagagaacagaaaaggaacaagcaccaactggcagtgaaagagttaaggttatagacatg
aagactggcaagaaggttcagtatggtggattgtacggacctgcgttgcaggacttaaag
gagtatcttgaagagaatcctcaccatgcagtagcaccagaatggtcagacactgttcgc
aactcgggcttcctgccagaacatttcttccaccgattgttgactctgcacacagaggtc
tccagacagagccacaattacctcaccaacccttcagcccaaactgaccctcatctggag
gaaggtgagaatgagacactggtttctgatggagcttacatcatggacgatgaagatctg
gacagtagtgcccttactactcatcacttcctaacttctacatatgatgctaagatggag
gctggttctcttgacatggacaaaggagatgctttgtcaccaattggatatgatagctct
gatagggaggctattttggatgatgtgattatggcacctaaaaattctgattcttcctca
tgctcagaagattga
DBGET
integrated database retrieval system
