Ictalurus punctatus (channel catfish): 108267960
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Entry
108267960 CDS
T04658
Name
(RefSeq) DNA polymerase nu
KO
K16618
DNA polymerase nu [EC:
2.7.7.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108267960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108267960
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108267960
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
A-family DNA polymerase
108267960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_P_Exo
Motif
Other DBs
NCBI-GeneID:
108267960
NCBI-ProteinID:
XP_017328059
Ensembl:
ENSIPUG00000007462
UniProt:
A0A2D0RBZ3
LinkDB
All DBs
Position
7:24810881..24865099
Genome browser
AA seq
1192 aa
AA seq
DB search
MQYQPCSMVTAGPLSAEAQRVLAALRAQYAGRIDSRPYIADSFGRAPRLSQIHDAFNKPP
EPHTQSKILYKEKERQLFKHSLEMELPSQPDLRQLGDGNNTFNQWGADKRGDRRPRDYGD
DGSLSGFNTGNNIPCPSRSPPEPDPQGEELFPRNSFVNRRTPHAVMGLPETHSEVSSRKE
RIQLLASSEEDCKAEVITRTPPVKRQRFGNRQIPMITCSKQFEEDDSRQKSEVGKTNENP
DQMPFWSFEEKEAEEYSRSLECQSYLKDNPTSRRECQTIGLALADSCHDSATNKILTNAS
HLRVHHNLVSLRTSDFDQYTVDKEASVTEIEPAKVEHNADLYMHQSDMKNDQMETERLSI
EPEHSAAPKVTETHPDQQIFSQVGRTSSGVACVQNVTLPAKRSGKWEPRQSSQGTPEIES
CSNRNSSVSGDAKVQLIHQAQQSRGRSQFLHPLKSIQNQEEMPVQTMTPLRECTKHESNV
EIIPDIPKAARQRRSASEVNEQIYPDTDRDGDKTKETTKCTLALTSDPRVCDASRLSQEE
RMCVLEEAASARVLVVTMVYQDGTTQLDPEQKCPPCAVCGVLVLLKKSLDSLVLEETGAA
AERVLFLRLEQRPAWAQNGPQHSQDLFSREILVKMVCGTQTFVCYKSKDLLRTVLGHFSK
NLSWKQVAGCQVLDPQIAAWLLDPADSASCFQDLLNKYCTRPTTHTPALAELGHKKVTQV
ISSLTHLHRVMVELRNKLETQGLWTLYFCMEQKMIPVLAAMESHRIHVDRDALKKTSEML
GTKMKQLEQEAHQTAGQKFLVSSSSQLRLVLFEKLRLHERCENKKLPKTMLKQQQSTSEA
VLLQLQDLHPLPKIVLEYRQVHKIKSTFLDGILSCMTKTFISSTWNQTSTVSGRLSARHP
NFQALPRQPVQISKKQCVEEKEAELVTVHPRTMFIPREGWTFLSADFCQVELRLLAHLSS
DRELLRIFQNPEADIFNMLASQWKGVSEDSVSAEDREHAKRIVYSVVYGAGKERLSGILG
VSAEEASRFQDSFLQKYKEVQAFIQCTVQHCHKYGYVKSIMGRRRSLPHVHSTDWSIRNQ
AERQAVNFVVQGSAADLCKMAMIHICSLVASSTTLTARLVAQIHDELLFEVEDSQMEDFA
VLVKKTMESLQHISCLGVSLTVPLKVSVSTGRSWGSMCEVNLPHAASTHTSV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcagtaccagccctgtagcatggtgactgcaggccctctgtctgcagaagcccagagg
gtcctggctgcactgagagctcagtatgctggcagaatagacagcagaccatacatagcg
gactcctttggcagagcccccaggctgtcccagattcatgacgccttcaacaaacctcca
gaaccacacacacagtctaaaatactttacaaggagaaagagaggcaattattcaaacac
tccctagagatggagctccccagtcagcctgacctacggcagttaggtgatggaaataac
acatttaatcaatggggagcagataaacgaggtgatcggaggccaagagattatggagat
gatggcagtctgtcagggtttaacactgggaataatatcccatgtcccagcagaagccct
ccagagccagatccacagggagaagagcttttccccaggaacagctttgttaacaggaga
accccacatgctgtcatgggattaccagagacacatagtgaggtctccagtaggaaggaa
agaatccagctactggcttctagtgaagaggattgtaaagcagaggtaataactcgcacc
cctcctgtgaagagacagcggtttggtaatcggcaaatacccatgatcacctgttcaaaa
cagtttgaggaagatgattctaggcagaaaagtgaagttgggaaaacaaatgaaaaccct
gatcagatgccgttttggagctttgaagagaaagaagcagaagaatactcaagatcactg
gagtgccagagttatttaaaagacaatccaacatccaggagagaatgtcagacaattggt
cttgccttagctgattcttgtcacgactcggctacgaataaaatactaacgaatgcaagc
catctgcgagttcatcacaatttggtttcactcagaaccagtgactttgaccagtacaca
gtggacaaagaagcatcagtgacggagatagaaccagccaaagtggaacacaatgctgac
ctgtacatgcatcagtccgacatgaaaaacgatcagatggagaccgagaggcttagcatt
gagccagagcacagtgcagctcctaaagtcacagaaacgcatcctgatcagcagatcttc
tcacaggtaggtcgtacgagttctggagtagcgtgtgtgcagaacgtgacccttccagcc
aagcggtctggaaaatgggagcctcgtcaatcatcacaagggactcctgaaatcgaatcg
tgctctaatcgaaactctagtgtcagtggagacgctaaagtgcagcttattcaccaggca
cagcagagcagagggagaagtcagttcctacacccactgaaaagtattcagaatcaggaa
gagatgccagtacagacaatgacccctttgagagaatgtacgaagcatgaatcaaatgta
gaaattatccccgacatccctaaagctgccagacagaggcgctctgcttcagaggtgaat
gagcagatatacccggacacagacagggatggggacaagaccaaagagactaccaaatgt
actctagccctaacctctgacccccgagtgtgtgacgccagccgtctctcacaggaagag
aggatgtgtgtgttggaggaggctgcgagtgcaagggtgctggtggttacgatggtatat
caggatggaaccacacagctggaccctgaacagaaatgccccccctgtgctgtgtgtgga
gttttggttctgctgaagaagagtctcgattcacttgttctggaggagactggagcagct
gcggagagggtgctgtttctgagactggaacagagacctgcctgggctcagaacggccca
caacacagtcaggatctattcagcagagagatactggtgaagatggtgtgtggaacccaa
acttttgtgtgttataaatctaaagacctcctccgaacagtactcgggcatttcagcaag
aatctgagctggaaacaagtggccggttgtcaggtgttggatcctcagattgctgcctgg
ttactagatcctgctgattctgcttcctgctttcaggaccttttgaacaaatactgtact
cggcccaccacacacacccctgcactggccgagctcggacacaagaaggtaacccaagtg
atctccagcctgactcacttacacagggtaatggtggagcttcggaataagctggagaca
cagggtctgtggactctctacttctgcatggagcagaagatgattccagttttagcagca
atggagagccacaggatccatgtggacagagatgccttaaagaagacctcagagatgctg
gggactaagatgaagcagttggagcaggaggctcaccagacagctggtcagaagttcttg
gtgtccagcagttctcagcttcgactggttctgttcgagaagctccgcctgcacgaacgc
tgtgagaacaagaagctacccaaaaccatgctcaaacagcagcagtccacctcagaggct
gtgctcttacagctccaggacctgcacccccttccaaaaatcgttctggaatacaggcag
gtgcacaaaatcaagtctacatttctggatgggattctgtcctgtatgacaaagacgttc
atctcgtccacgtggaaccagacgagtactgtcagcggtcgactgtctgccagacatcca
aatttccaggctcttcccaggcagccagtacagatctcaaagaagcaatgtgtcgaagag
aaggaagcagagctggtaactgttcacccacgtaccatgttcataccacgagagggatgg
actttcctttccgcagatttctgtcaggtggaattgcgtctgttggctcatctgtcatct
gaccgcgagctcttgagaatcttccagaaccctgaagcagacatttttaacatgctcgcc
tctcagtggaagggtgtaagtgaggacagtgtaagcgcagaggacagagagcatgccaaa
cgcattgtctattcggtggtctatggagctggaaaggagcgtctgtctggtatactgggt
gtgagtgctgaagaggccagtcgttttcaggacagtttccttcagaagtacaaagaggtg
caggcctttatccagtgcaccgtacagcactgccacaagtacggttacgtaaagtccata
atgggtcggcgccgttccctccctcatgtccattcaacggactggagcatccggaaccag
gcagaaagacaagccgtcaactttgtagtgcaaggttctgctgcagacctctgtaaaatg
gccatgatacacatctgctcactcgtggcgtcttccaccactctcactgccaggctggtg
gctcagatccatgatgaactactctttgaggtggaggactcacagatggaagactttgca
gtgttggtgaagaaaacaatggagtcccttcagcatatcagttgtcttggagtcagtctt
acggttcctctgaaggtctctgtgtctacaggacgatcgtggggttccatgtgtgaagtc
aatctcccccatgctgctagcacacacacctctgtttga
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