Ictalurus punctatus (channel catfish): 108268018
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Entry
108268018 CDS
T04658
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108268018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108268018
Membrane trafficking [BR:
ipu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108268018
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108268018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
108268018
NCBI-ProteinID:
XP_017328136
Ensembl:
ENSIPUG00000007205
UniProt:
W5U8Z9
LinkDB
All DBs
Position
7:complement(8358243..8368814)
Genome browser
AA seq
935 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIVTGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSMVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMADKVAASQESNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIGYQL
AVEAESEQKWKQLAELAINKCQFGLAQECLHHAQDYGGLLLLATASGNASMVNKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLSKV
NQKAAESLADPTEYENLFPGLKEAFLAEQYLRESCLHKSRPATDYPLVTPNEERNVLEEA
SSYEPKGVLPTHTQQAADPVESKAEAEVPAVKAAPVDPPVASVAPPKPEPAKKEEEDITK
FREKTLEELEDDLDNLDLDDIDTTDVNLDDDFLDD
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctggacatcaagcgcaagctcacagctcggtccgaccgtgtcaaaagc
gtggacctccatcccaccgagccatggatgctggctagtctctacaacggcagcgtgtgt
gtctggaaccacgaaacacaaaccttggtgaagacgttcgaagtgtgtgacctgccagtg
agagctgcgaagtttgttgcaaggaagaactgggtcataaccggagcggacgacatgcag
attcgcgtcttcaactacaacacgttagagcgggtgcacatgttcgaggcccattcggat
tacatccgatgcatcgccgtgcaccctactcagccctacatccttactagcagtgacgat
atgctcattaagctgtgggactgggagaagaagtggtcctgcagtcaggtgtttgagggc
cacacacactacgtcatgcagattgtcatcaaccccaaagacaacaaccagtttgcaagt
gcttcgttggacagaaccatcaaggtatggcagctgggttcctcatcccctaacttcact
ctggagggccacgagaaaggcgtgaactgcatcgattattacagcggcggagataagccg
tatctcatttcaggagctgatgacaggctggtgaagatctgggactaccagaataagacg
tgcgtgcagacactggagggtcacgcccagaatgtgtcgtgtgttagcttccaccccgag
ctgccaatcatcgttacaggatccgaggacggtacagtgcgcatctggcactccagcacc
taccgactggaaagcacgctgaactacggcatggagcgggtgtggtgtgtgtgtggcctg
cgtggttccaacaacgtcgcgcttggttatgacgagggcagcattattattaagcttggt
cgtgaggagcctgccatgtccatggacaccaacgggaagattatctgggccaagcattca
gaggtacagcaggccaacctgaaggccatgggcgacacagagattaaagacggagagagg
ctgccattggccgtcaaagacatgggcagctgtgagatctacccacagactattcagcac
aaccctaatggaaggttcgtggtggtttgcggagatggagagtacatcatttacacagcc
atggctctgaggaacaagagctttggctctgctcaggagtttgtttgggcccacgattct
tctgagtatgcaatcagagaaagcaacagcatggtgaaaatcttcaagaactttaaggag
aagaagtccttcaagcctgactttggagcagagggtatctacggtggatttttgttgggc
gtcaggtccgtaaacggcttggctttctatgactgggagaatacggagttgattcgccgc
attgaaattcagcccaaacatattttctggtcagactctggagagctggtgtgcattgcc
acggaggagtcgttcttcatcttgcgctacatggcggacaaagtggctgcatcacaagag
tccaacgaaggggttactgaggatggcatcgaggatgctttcgaggtccagggcgaaatc
caggagattgtgaagacaggtctgtgggtgggagactgcttcatctacaccagctctgtt
aaccggctgaactactttgttggaggagagatcgtcaccatcgctcacctggatagaacc
atgtacctgctgggctacattcctaaagacgaccgactgtacctaggagacaaggagctg
aacatcgtcagttactcgctgctggtgtcggtgttggagtaccagacagctgtcatgcgg
cgtgacttctccatggctgacaaagtcctccccaccattccgaaagagcagaggaccagg
gtggcgcacttcttggagaaacagggtttcaaacagcaagcactggccgtgtctactgac
ccagagcacaggtttgagcttgctttacaactgggggaactgaagattggctaccagcta
gcagtagaagcagagtctgagcaaaagtggaagcaactggcagaactggctatcaataag
tgccagtttggcttggcacaggagtgccttcatcacgcccaggactacggaggcctgctg
ctgttggctacagcttctggcaacgcatctatggtgaacaagctggccgagggcgctgaa
cgggacggcaagaacaacgtcgccttcatgacctacttcttgcaggggaagttggaccag
tgtctggaacttctgattaggaccaaccgcctgcccgaggccgccttcctcgctcgcacc
tacctgcccagccaagtgtccagagtggtaaagctgtggagggagagcctgtcaaaagta
aaccagaaagcggcagagtcgctggccgaccccaccgaatatgagaacttgttccctggg
ctgaaagaggctttcctggctgagcagtacctccgagagagctgcctacacaagagcaga
cctgccactgattacccactggtcacgcccaacgaggagcggaatgtgttagaagaagcc
agcagttacgaacccaaaggcgtacttcccacccacacacagcaggctgcagaccccgtg
gagtctaaagcagaagcagaagttccagcagtcaaggctgctcctgttgatcctccagta
gcgagtgtggctcctccaaagcctgaacctgctaaaaaagaggaggaagacattacaaag
tttagagaaaagactctggaggagctggaggacgacctggacaacctggacctggacgac
atcgacactacagacgtcaacctggacgacgacttcttagacgactga
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