Ictalurus punctatus (channel catfish): 108268132
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Entry
108268132 CDS
T04658
Symbol
myom1a
Name
(RefSeq) myomesin 1a (skelemin) isoform X2
KO
K24495
myomesin
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108268132 (myom1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108268132 (myom1a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
108268132 (myom1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
fn3
Ig_3
ig
Ig_DSCAM-DSCAML_C
Ig_2
V-set
Pur_ac_phosph_N
Tissue_fac
C2-set_2
C2-set_3
Motif
Other DBs
NCBI-GeneID:
108268132
NCBI-ProteinID:
XP_017328365
UniProt:
A0A2D0REP8
LinkDB
All DBs
Position
7:complement(6743803..6775281)
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AA seq
1492 aa
AA seq
DB search
MAGSIQVQQEQQRRSLETQYESSYHQSSLSSFSHRSYAAHVSSVGLETSSKKQEKKLSSI
SRVQTSGKKLEKKLSSTSRVKSSSKKQEEKKTSYAREHKCACLALDKEESVVGYVVPVCR
SSYLATQDLMESQEELKEEGLGYVVMKNLFSRDAAYQLKLVKKSRSTTMRESAERLSLSK
KIEEKHEFQRKLNADSLTHPPEFIVKPRGQTVWEGKSVTLHCTVAGWPKPRVAWYKNNLL
IDAKAHAEKYTTESNYNMHSLEIKNCEFDDTAEYRISALNVKGESSAFASVIVKRFKDGE
ATERPHGFSPEHGVTFRTTVIDKFGVAFGREGETMSLGCTVIVYPTVKRYQPEVLWYRNG
VVLEPSQWVQMHWSGQRATLTLIHLNKEDEGLYTLRVNTKSGFDSHSAFVFVRDADVEVE
GVPVAPLDVRCHDANKDYVVVTWKQPAVEGSSSVLGYFIDRCEVGTRHWIQCNDTPVKYA
RFPVTGLVEGRTYIFRVSALNIAGVSHPSRVSDPVVAMDPSDRARLRAGVSAPWTGMIKF
TEEDPTVGVIPGSPTDLAVTEATKSYVVLSWKPPVQRGHEGVMYYVEKCMVGTDTWQRVN
TGMPAKSPRFALFDLAEGKSYTFRVRSCNSAGVSEPSEETGATTVGDRLDLPSAPGPVVP
IRNTASSVVVTWKASKEAVELVRYYVEVSVVGSNVWVPCNNKPVRDTRFVCHGLNTGDSC
VFRVKAVNAAGYSTHSSESESCLVKAAIEVPSPPSALTLVERFRDYMVLNWQAPAKTGGV
DIRGYYLDYRTVKGGVVSKWHEINTKAATGTTYKVEDLKENVLYQFQVRAVNQAGISESC
ISSVAFECKEWTVALPGPPHGLHMLEVRKDSLVLLWEPPTFNGRSPVTGYYVDIKEGNGK
WRGVQDRSTKNTYLQISGLKEGASYILRVTAKNIAGVGGPSKATDPIVAQTRPGTNEIVV
DVDDDGVISLIFECSEMTESSRFVWSKNYEALADTSRLTIETVRGKSRAIFNDPSLEDLG
VYSCVVTNTDGVSASYTLTEEGLRRLLDISHDHKFPIIPFKTEMAVELQEKGRVRFWAQV
AKFTSKCQVEYVFNDNIITQGKKYTMNFDSKTGIIEMFMDSLEITDEGTFTFNLVDGKAT
GRTSLVLIGKEFAELQKKSEFERAEWVRRQGPHFVEYLSFEVTRECNVYLKCKVGNIKAD
TEITWFKDGIEIAEDDEDAQKIGIADGVLSFNIGKLSKKDAGVYEVKLWDERGKDKTLLD
LTEAGYKAVLNEMFRVIAHSSTELKVQSTEHGIILHSFVVYHTEELPVGWFHKDSKVSHS
DRVQCGVTGEQLWLKINEPTDKDKGKYAIDIFAGEGSVRRVLDLAGQVWEEAYSEFQRLK
AAAIAERNRARVIGGLPDVVTIQEGKSLNLTGNVWGEPTPEVTWLKNDKELVRDDHITLK
FEHGKFASITIAAVNSADSGKYALLVKNKYGTEAGEFTVSVYIPEDEAEKKE
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatccatacaagtgcaacaggagcagcagcggcggagtctggagactcaatat
gaaagcagctaccaccaaagctcgctgtcgtcctttagccaccggtcttatgcagctcac
gtgagcagcgtggggctggagacttcgagtaagaaacaggagaagaaactgagctccatc
tccagggtgcagacttctggtaagaagctggaaaagaaactgagctccacttccagggtg
aagtcttcaagtaagaagcaagaggaaaaaaagacttcctacgccagagaacacaagtgc
gcctgcctggcactggacaaagaggagagtgtcgttggatacgtggttcctgtttgtaga
agcagttatttagccacacaggatctgatggagagccaggaggagctgaaggaggaaggt
ctgggctatgtggtcatgaagaacctcttctccagagacgctgcgtaccagctgaaactg
gtgaagaagagccgcagcacgactatgagggagtctgcagaaagactgtcccttagcaag
aagattgaagaaaagcacgagttccagaggaagctgaacgcggacagcctgactcatcct
cccgaattcattgtgaaaccgcgtggtcagactgtgtgggaaggcaagagtgtgacactg
cactgcactgtggctggctggcccaaaccccgcgtggcctggtacaaaaacaacttgctc
atcgatgcaaaggctcacgctgagaagtacaccaccgaaagcaattacaacatgcactct
ctggagattaaaaactgcgaattcgatgacaccgccgaatatcgcatctcggccctcaac
gtgaaaggcgagagctctgccttcgcgtcggtcatcgttaaaagatttaaagacggagaa
gcgactgaaagaccccatggtttcagtcccgaacatggcgtcaccttcaggaccaccgtt
atcgataagttcggagtggccttcggccgtgaaggagagaccatgagtttgggctgcact
gtcatcgtctatcccactgtgaaacgctatcagcccgaggtgctctggtacaggaacggt
gtggttctggaaccatctcaatgggtgcagatgcactggagtggccagcgagccacactc
actctcatccacctcaacaaagaggacgaaggactttacactctgcgggtcaacaccaag
tcgggcttcgactctcactccgcctttgtgtttgtccgagacgctgacgtggaggtcgaa
ggggtccccgttgcccctctggatgtgaggtgtcatgatgctaataaggattatgtcgtg
gtgacctggaaacagcctgcggttgagggaagcagctccgtcctgggctactttatagac
aggtgtgaagttggcactcggcactggatccagtgtaatgacactccagtgaaatatgcc
cgttttccagtcaccgggctcgtagaagggcgcacttacattttccgggttagcgctttg
aacattgccggggtgagtcacccgtctcgtgtctctgaccccgtggttgccatggatcca
tctgaccgagcccgtctgagagctggtgtttccgctccgtggaccggtatgatcaaattc
actgaggaagatcccacagttggtgtaatccctgggtctcctactgatctggctgtgact
gaggctactaagagctatgtggtgctcagctggaagcctcctgttcagagaggacatgaa
ggagttatgtattatgtagagaagtgtatggttggcacagacacctggcagagggtgaac
actgggatgcctgcgaagtcccctcgctttgccctttttgacttggccgagggcaaatcc
tacaccttccgcgtgcgttcctgcaactccgcaggtgttagcgagccgtctgaggaaacc
ggagccacgactgtcggggacagactggacctgccctcggcaccagggcctgttgtgccc
atcaggaacacagcctcctccgttgtggtgacctggaaggcttctaaagaggccgtagag
cttgtgcgctactacgtggaagtcagcgtcgtgggcagcaacgtgtgggtgccatgcaac
aacaagccagtcagagacaccaggtttgtgtgtcacgggctgaacacgggagacagctgt
gttttcagagtgaaggccgtgaacgctgccggctacagcactcactccagcgagtccgaa
tcctgccttgtaaaagcagccatcgaggtgccgtctcctccgtctgctctcactttggtg
gagcgttttcgtgactacatggtgttgaactggcaggctcctgctaaaaccggaggagtc
gatatcaggggctactacctggattacaggaccgttaagggcggtgtcgtaagcaagtgg
cacgagatcaacaccaaggccgccactggaactacctataaggtggaagacctgaaggag
aatgtattgtaccagttccaggttcgtgcagttaaccaggctggcattagcgagtcctgc
atcagcagcgttgccttcgagtgtaaggagtggaccgttgcattgccaggccctcctcat
gggcttcacatgctggaggtgagaaaggactcattggtgctgctttgggagccgcccacg
ttcaacggccgtagccccgtcaccggctactacgtggacatcaaggaagggaatggcaaa
tggagaggagttcaggacaggtccaccaagaatacatacttgcagatatcgggcctgaag
gaaggtgcctcctacatactacgtgtcactgctaagaatattgcaggtgttggtggaccc
tccaaagctacagaccccatcgtcgctcagactcgcccaggcactaatgagattgtggtc
gacgtggatgacgatggcgtgatctcgctgatcttcgagtgctctgagatgactgaaagc
tctcgatttgtgtggtcaaagaactacgaggctctcgccgatacctcccgtctcactatc
gaaacagtcaggggaaaatccagagccatctttaatgatccttcactggaggacctgggc
gtctactcctgcgttgtcaccaacactgatggagtttctgccagctacacactgacagag
gagggactgaggcgcttgttggatatcagccatgaccacaagttccccattattcctttc
aagaccgaaatggctgttgagctacaggagaaaggacgcgtgcgtttctgggcgcaggtt
gctaagtttacctccaaatgccaagtggagtatgttttcaacgataacatcattactcaa
ggaaagaaatacaccatgaacttcgacagtaaaaccggcattatcgagatgttcatggac
tctttggaaatcaccgatgaaggaaccttcacgtttaacctcgtcgatggcaaagctacc
ggtcgtaccagtttggtgcttattggaaaagagtttgctgagcttcagaagaagtctgag
tttgagagagcagagtgggtcaggagacaaggccctcactttgtggaatacctcagtttc
gaggtcacccgagaatgtaacgtgtacctaaaatgcaaggtcggaaatatcaaagcggac
accgagataacctggtttaaggacggaattgagatcgcggaggatgacgaagacgctcag
aaaattggcatcgcagatggcgtgctgtccttcaacattggcaagctttcaaagaaagac
gcgggtgtttacgaagtgaagctgtgggacgagagagggaaggataagactttgttggac
ctgacggaagcaggttacaaggccgtgctgaatgaaatgttcagagttatagcgcactct
tctaccgaattgaaggttcagagcaccgagcatggaatcatcctccactcgttcgtcgtg
tatcacacagaagagctccctgttggttggtttcacaaagatagcaaggtttcacactca
gacagagtgcagtgtggagtcacaggagagcagctgtggctgaagatcaacgagcccaca
gacaaggacaagggcaagtacgccatcgacatcttcgccggcgaaggcagcgtcaggaga
gttctcgacctcgccggccaagtgtgggaagaggcctattcagagttccagaggctgaag
gctgcagctatcgcagagagaaaccgagcgcgtgtgatcggaggcctgccagatgtggtc
acgatccaggaaggcaagtctttgaacctcaccggcaacgtgtggggcgaacctacacct
gaggtcacttggctgaagaatgacaaagagctggtacgtgacgatcacatcacgctcaag
tttgagcacggcaagttcgccagcatcaccatcgcggcagtcaattcggccgactcgggc
aagtacgccctgctggtgaagaacaagtacggcacagaggctggcgagttcaccgtcagc
gtctacataccagaagacgaggctgagaagaaagagtag
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