Ictalurus punctatus (channel catfish): 108268151
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Entry
108268151 CDS
T04658
Symbol
puf60b
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-B isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108268151 (puf60b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108268151 (puf60b)
Spliceosome [BR:
ipu03041
]
Complex A
U2 snRNP components
U2 related factors
108268151 (puf60b)
Complex B
108268151 (puf60b)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
108268151
NCBI-ProteinID:
XP_017328421
Ensembl:
ENSIPUG00000004660
UniProt:
A0A2D0RE55
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Position
7:7074268..7088365
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AA seq
522 aa
AA seq
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MMENGQGTGSKLGLPPLTPEQQEALQRAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA
VTMGFGDPLSPFQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW
DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGNIGQAQPIIDQLAEEA
RAYNRIYVASVHPDLSDEDIKSVFEAFGKIKACMLAREHTTGKHKGYCFIEYEKPQSAVD
AVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAVAAAAATAKITAQEAVAGA
SVLGSLASPAQLLSQQMGLPQAVLAAQAPGLITGVTPVRPTLPVVPQVGLVNPVLASPPI
TSSATSTGTPTSTTPQQPEVKREVQDKQQEKDEARADAVEQRSVNEQEQNRSSEGSPTVT
HSGSTVMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRVIIYQERQGEEDDAEIIVKIFV
EFSDSGEMNKAIQALNNRWFAGRKVVAEVYDQERFNKSDLSA
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaatggtcaaggcacaggctccaagctgggcctgccacccctcactccagag
cagcaggaggcactgcagagggcgaagaaatatgctatggagcagagcattaagagcgtc
ctggtgaagcaaaccatagctcaccaacagcagcagcttactaacctgcagatggcagcc
gtgactatgggctttggagatcctctctcaccctttcaatcggttgcagcacagaggcag
cgagctctcgccatcatgtgccgcgtctacgtgggctccatctattacgagcttggcgag
gataccattcggcaggcttttgcgccgttcggcccaatcaagagcatcgacatgtcctgg
gactccgtcacaatgaaacacaagggctttgcctttgtggagtacgaggtgcccgaggct
gctcagctggctctggagcagatgaactctgtcatgctgggtggaaggaacattaaggtg
gggcggccaggtaacattggacaagcacagcccatcattgaccagctggccgaggaagca
cgtgcatacaatcgcatctacgtagcctcggtgcacccggacctgtccgacgaggacatc
aagagcgtctttgaggccttcggcaagatcaaagcctgcatgctggcccgagagcacacc
acagggaagcacaaaggctactgcttcatcgaatatgaaaagcctcagtcagcggtagac
gcagtgtcctccatgaacctgtttgacctgggaggtcagtacctgagggtggggaaggcc
gtgaccccacccatgcccctgctcaccccgacgacccccggaggtttgccgcctgctgcg
gctgtagctgctgctgccgccactgctaaaatcacagcccaggaggctgttgcaggggcg
tccgtgttgggctcgttggcgtctcccgctcagctcctcagccagcagatgggacttcct
caggctgtgctggcagcccaggccccaggcttaattacaggtgtcacacctgttcggccg
actctgcccgtggtgcctcaggtgggcctggtaaaccccgtgctggcgtcaccacccatc
acatccagtgccacgtccacaggaacaccaacaagcacaactccgcagcagcccgaggtt
aagagagaggtacaggacaagcagcaggagaaagacgaagctcgagcagacgctgtggag
caaaggagtgtgaacgagcaggagcagaacagaagcagtgagggcagccccacagtcaca
cactcagggtctacagtaatggtgttgcgcaacatggtgggccctgaagacatcgacgac
gacctggagggggaggtgaccgaggaatgcgggaagttcggcgccgtaaaccgggtcatc
atctaccaggaacgtcagggcgaagaagacgacgccgaaatcatcgtgaagatcttcgtg
gagttctccgacagtggcgaaatgaataaggccatccaggccctgaacaaccggtggttc
gcgggtcgcaaggtcgtggccgaagtctacgatcaggagcgtttcaataaaagcgacctt
tcggcataa
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