Ictalurus punctatus (channel catfish): 108268298
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Entry
108268298 CDS
T04658
Name
(RefSeq) TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108268298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108268298
03036 Chromosome and associated proteins [BR:
ipu03036
]
108268298
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108268298
Coactivators
SAGA/TFTC/STAGA complex
108268298
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108268298
STAGA complex
108268298
TFTC complex
108268298
SAGA complex
108268298
SLIK complex
108268298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
CENP-S
Motif
Other DBs
NCBI-GeneID:
108268298
NCBI-ProteinID:
XP_017328666
Ensembl:
ENSIPUG00000018008
UniProt:
A0A2D0REU8
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All DBs
Position
7:complement(13565530..13573295)
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AA seq
639 aa
AA seq
DB search
MVKMTETREERRFAEVSRDSIKLMAESAGVELADELASMLAEDVCYRLREAAQNSSQFMR
HAKRRKLTVEDFNRGLRWSNTEVVCGYGAQDAVPFRALKEGELFFVEDREVNLVELALAT
NIPKGCAETTVRVHVSYLDGKGNLEPQGTVPSAVQSLSDDLLKYYQQITRAILGEDPHLM
KVALMDLQSNSKIAALLPYFVYVISGVKSVSHDLDQLNRLLHMVKSLVQNPYLYLGSYVR
SLVSSVMYCILEPLAASINPLNDHWTLRDYAALLLSHIFWTHGDLVSGLYRQILLSLQKV
LSDPVRPLCSHYGAVVGLHALGWKAVERVLYPHLPAYWANLQAVLDDYSVSNAQVKADGH
KVYGAILVAVERLLKMKALSLTAEGGPAALQSSAGGGMCFRESSPGLSPPPEALSEAPLG
IASHLQAAGTGCQWEEWTPVSLPAMYCELYSFFGDSLAVRFSTGPALGSAPAAAPVQPSD
ARKESGSGAGSMESTRKMPQLTANMNLSPRPDGSPRTETVPPTLGATGRSLARSSSSSAV
PRSRSSSRPGRSASQSRDIFPKARFLPSQVGPPAFSFLIGGRQMGRRCQGRRFQTSFTPT
PSVSSLPPRAYAHKLPVIGRVSKPVRRWTCSHYSLYLPL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagatgactgagactagagaagagcgtcgtttcgctgaagtttcccgagactcc
atcaagctgatggcggagagcgccggcgtggagctggctgatgagttagcctcgatgctc
gccgaggacgtgtgttaccgcctcagagaggccgcacagaacagctcccagtttatgaga
cacgccaagagacgaaaactgactgtcgaggacttcaacagaggactgcgctggagcaat
actgaagttgtttgtggttatggggcccaagatgccgtaccattccgggcgctgaaagag
ggcgagcttttctttgttgaggatcgggaggtgaacctggtcgagttggctcttgccacc
aacattcccaagggctgcgctgagacgacagtgcgagtgcatgtgtcttatctcgatgga
aaaggaaatctggaacctcagggcacagtccccagtgctgtgcagtctttgtcggatgac
ctactcaagtattaccagcagatcactagagccatattaggagaggatccacatcttatg
aaggttgctttaatggatcttcagtccaactccaagattgccgctctcctgccttatttt
gtttatgtcatcagtggggtgaagtctgtaagtcatgatctggatcagctgaaccggctg
ttgcacatggtgaagagtctggttcagaacccatacctgtatcttggctcgtatgtgcgc
agtctggtctccagcgtcatgtattgcatcctggagccgcttgccgcctctattaatcca
ctcaatgaccactggaccctgagggactacgctgctctgcttctcagccacatcttctgg
actcatggtgatctggtgagtggactgtaccgtcagattctgttgtcactgcagaaggtc
ctgtcagacccagtgcgtccactctgctctcactatggagctgtggtcggcttgcacgct
cttggctggaaggctgtcgagcgtgtgttgtatccccacctccctgcctactgggcgaac
ctgcaagccgtgctggacgattactctgtctctaatgcgcaagtaaaagcagatgggcac
aaagtctatggagccattcttgtggcggtggagcgtctgctaaaaatgaaagccctgagt
ttgactgcagaaggcggtcctgctgctcttcagagttctgcgggaggagggatgtgcttt
agagagagctctccaggactcagtccccctcctgaagccctgtctgaagcccctctgggt
atcgcaagccacttgcaggcagctggaacaggatgccagtgggaagagtggacccctgtc
tccctgcctgccatgtactgcgagctctactccttctttggagacagcttggctgtgcgt
tttagcacaggtcctgctttaggcagtgcaccagctgcagctccagtgcaaccttctgat
gccaggaaagagtcagggagtggcgcaggcagcatggagagcacacgcaagatgccacag
ctcactgccaacatgaacctcagccccagaccagatggaagcccacgtactgagacggta
ccacctactctgggtgctactgggaggtctctggcccgctcttcctcctcatccgcagtc
cctcgttccaggtcctcgtcccgtcctgggcgttctgccagccaatccagagacatcttc
ccaaaagctcgcttcctgccttcccaggtggggcctccagccttttcctttttgatcggt
gggagacagatgggccggagatgccagggacgacgtttccagacgagcttcactccaact
ccatccgtcagctcccttcctccacgggcctatgcccacaaacttccagttatcgggaga
gtgagcaaaccagtgagacgctggacgtgctctcattattcgctgtatctgcctctttaa
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