Ictalurus punctatus (channel catfish): 108268352
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Entry
108268352 CDS
T04658
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108268352
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108268352
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108268352
NCBI-ProteinID:
XP_053537591
UniProt:
A0A9F7R8P8
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Position
7:complement(15049820..15220176)
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AA seq
537 aa
AA seq
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MLCCVVVVFVIPFCPQGLPGVPSMAALHSNQILTVKGDQGQAGPPGPPGPPGPPGPRGPP
GDTGKDGPRGAPGLPGDPGTPGELGPMGPEGPPGLKGSTGSPGIPGIDGLKGDRGEQGEK
GDMGEEGPKGNVGEKGDAGSSAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLG
PQGEPGLPGLPGTKGERGEPGPPGKGERGETGPVGPKGAEGEPGTPGLKGSKGETGDKGD
VGFTGPTGPAGEKGDQGTTEIIDYNGNIQEALQKITTITVTGPPGPPGPIGPQGIKGDQG
PPGLPGLDGERGHKGSKGDMGMPGMSGDKGSVGLPGLPGFNGQKGEKGDNGMPGPQGPSI
IGPPGALGPHGPPGPMGPHGFPGQKGEAGLPGLKGARGEPGYKGDRGPLGLPGASGLDGK
PGLRGTDGPTGAPGPAGPKGDRGEKGVTGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGD
VGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgttatgttgtgtggttgttgtttttgttataccattttgtccccagggacttcctggt
gtgccctccatggctgcattacacagcaatcaaatcctgactgtaaagggtgatcaaggt
caagcaggccctccaggacctcctggacctccaggtcctcctggccccaggggaccccca
ggagacacagggaaggatggtcccaggggagctccagggctaccaggtgacccaggaacc
ccaggagagctcggccccatgggacctgagggccctccaggcctcaagggatccactggg
tcacctggcattccaggtattgatggattgaagggtgacagaggagagcaaggtgaaaag
ggtgatatgggagaagaggggccaaaaggcaatgttggtgagaagggtgatgcgggttct
tctgctgctggcattaagggtgaaccaggtgaaccaggacgaagtgggcaaaagggagaa
ccaggacttccagggctgcctggacttcccggaataaagggtgaacctggctttctcggc
ccgcagggtgagccagggctaccaggactacctggaacaaagggagaacgaggagagcca
ggaccgccaggaaagggtgaacgtggggagacaggcccagttggaccaaagggagcagaa
ggggagccaggaacaccgggactcaaaggatccaagggggaaactggagataaaggagat
gttggatttacaggacccacaggtccagctggagagaaaggtgaccagggcacaactgaa
ataattgactacaatggaaacatccaagaagcgcttcagaagataaccactattacagtg
acgggtccccctgggcctcctggaccaattggaccacagggcattaagggtgatcaaggt
cctcctggtcttccaggtcttgatggcgagaggggtcacaagggttcaaaaggagacatg
ggaatgccaggaatgtctggcgataagggatctgtaggattgcctgggctaccaggtttc
aatggtcagaaaggtgaaaaaggtgataatggcatgcctggacctcaaggaccatctatt
attggccctcctggggcacttggtccacatggtcctcctggtccaatgggcccacatgga
ttccctggacaaaagggagaagcaggtttgcctggtttgaagggagcacgtggggagccc
gggtataagggtgaccgtggacccctgggcctccctggagcgtctggcttggatggcaag
ccgggattaaggggtacagatggcccaactggtgctcctggtcctgctggtcctaaagga
gatagaggtgagaaaggtgttacaggtgaacctgggccaagaggaccatatggattacct
ggtgctgctgggacacctggcttggatgggttaccaggcttaaggggagagaagggcgac
gtgggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaagggg
gagaaaggagaacagggtgcccctggattagatgcaccctgcccattggggccagatgga
ttaccaatgcctggttgctggcaaaagggagtcacaccttggctggtggcctga
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