Ictalurus punctatus (channel catfish): 108268391
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Entry
108268391 CDS
T04658
Symbol
pcdh20
Name
(RefSeq) protocadherin-20 isoform X1
KO
K16498
protocadherin delta 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108268391 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108268391 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108268391 (pcdh20)
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108268391 (pcdh20)
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
108268391 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PRIMA1
Motif
Other DBs
NCBI-GeneID:
108268391
NCBI-ProteinID:
XP_017328818
Ensembl:
ENSIPUG00000016521
UniProt:
A0A2D0RE67
LinkDB
All DBs
Position
8:4237267..4242276
Genome browser
AA seq
836 aa
AA seq
DB search
MVCLLQKVLLVASVRQIICHTLMTLSTPEERPEGIKIGTLSTAYSPPYQLLGRSYLRVDE
ETGDVYTTEQMIDRETVCPSQEGGYCTISADALVGPEQELMKITIIVEDINDNAPYFETN
EIRLRIPEDARIGVRVLLDDKAQDKDAGSNAEIMYHLEGTEGFFSVAQNSSALELIVERE
LDRETQNEHCMVLVAVDGGSVPLSAMVSLVVTLLDVDDQCPQFSPDNPSTVSVPGGVTRG
TTVAKVQAIDPDLGSNSQITYSFSLQISDRAKELFHLDRNTGRISIAMDMRLDSLEEHVL
KVVVNSPPCPIEQTQVTVYLQPVFSPEPSVEIKYVAQYRNQTIILRENEPPTLLALLELR
DISSFEWVLSLEEDSTAFSLKAQAGNYLLSTTKPLDFELCSKYLVTVVISKAQGKRVHAR
KEIEVMVEDVNDNAPQFEETDYQVVIEENNKPGVSLVQVSASDADSQLYGNVSYRLIHNT
HLIFNIDEVTGIVSVLESLDREQQGEYILTVLARDNGSPPLEAFSSVSIKVLDRNDNQPT
FVTPHFVFFISEDIPHLAQIAKIGIVDADEGDNGRVVDVQVLDKDVPFAMDLSQSALRCT
GEVDREKHERYELLLLAVDGGSPQRSSTASVTVFVEDVNDNQPQVLLPSSNLSCLTISPN
TRVGSIITKIYATDRDSGMNSDITYHIIAREPINPNPFQIDTHSGNITLVQQLVAKDYGM
HHLLIRVSDRGKPAPLQATVWVNVLVNDVSKQCHLTTVPPYFPRAPDPPSPPKPHNLTAS
CPDLSWLLLFCGLGMMVFSVCMFLVTVIICIRQKNFMRKKMHKRDHANEHELKHLN
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgtctgttacagaaggtgcttctcgtggcatctgtcagacagatcatatgccac
actctgatgactctttcgacaccagaggaacgacctgaaggaatcaagattggcacccta
agcacagcctactctcctccataccagctgcttgggagatcatatttgagagttgatgag
gaaaccggggatgtgtacacaacagagcagatgattgaccgggagactgtgtgtccatca
caggagggtgggtactgtaccatctcagctgatgccctagtgggccctgaacaagaactg
atgaagataactattattgtggaggatataaatgacaatgctccttattttgaaacaaat
gaaattcgtttaagaattccagaggatgcgagaatcggggtaagggtgctgctggacgac
aaggctcaggacaaggacgcaggcagcaacgcagagataatgtatcatttagaaggcact
gaaggattctttagtgtggcacagaacagttctgcccttgagctgattgttgaaagagag
ctggaccgtgaaactcaaaacgagcactgcatggttcttgttgctgttgacggtggctct
gtgcctctgagtgctatggtgtctttagttgttactctgctggatgtagacgatcagtgc
ccacagttcagccctgataaccctagcactgtttcagtgccaggaggagtgacccgggga
acaacagtggccaaggttcaagccatagacccagacctgggcagcaacagtcagatcact
tactccttcagtctccagatctcagatcgggccaaggaacttttccacttggacagaaac
acaggcaggatcagtatagctatggatatgaggttagacagcctggaggaacatgtgctt
aaagtggttgtgaatagcccaccttgccctattgagcaaactcaggtaactgtatatctg
cagccagtgttcagcccggagccatctgtcgagatcaagtatgtggcacagtatagaaac
caaactataatattacgggagaatgaaccaccgactctcttggctcttttggagctgaga
gacatctcaagtttcgaatgggttctgtccttagaggaagacagcacagcattctctttg
aaagcacaagcaggcaactatctactttcaactacaaaaccactagattttgagctgtgt
agcaaatatcttgttactgttgttataagcaaagcccaaggcaaacgtgtgcatgcaagg
aaagaaatagaagtgatggttgaagatgtgaatgataatgccccacagtttgaggagact
gactatcaggtggtgatcgaggagaacaataagcctggcgtctctttagtacaagtcagt
gcaagtgatgcagatagccagctttatggcaatgtgtcatacaggctgattcataatacc
catcttatctttaatattgatgaagtgacaggtatagtgtctgttttagagtctttggac
agagagcaacagggagaatacattctcacagtgctggccagggacaatggctctcctcca
ttagaggccttttcatcggtgtccataaaggtgctcgatcgaaatgataaccagccaacc
tttgtgacaccacacttcgtcttcttcatctctgaagatattccacacttagcccagatt
gcaaagattggaattgtggatgcagatgagggggataatggaagagtggtggatgtacaa
gtactagacaaggatgttcccttcgccatggacctgtcccagtcagcgcttcgctgtaca
ggtgaggtggaccgcgagaagcatgagcgttatgagctgctcctgctggctgtagatggc
ggtagtcctcagcgctcatccactgcatctgtaactgtttttgtggaggatgtaaatgat
aaccagccccaggtgctcctgccaagcagcaacctctcctgcctgaccatatcccctaac
accagggttggcagcatcatcactaaaatttatgctactgaccgtgactcaggcatgaat
tcagatattacttaccacattatagccagggagccaatcaatcccaacccatttcagatc
gacacacactcagggaacatcacactggtacagcagcttgtggccaaggactacggtatg
catcacctcttaatcagagtcagtgatagagggaagcctgcacctcttcaggccactgtg
tgggttaatgtactggtcaatgatgtttccaagcagtgccacctgactactgttccccca
tattttccccgagccccagatcccccatcgccaccaaaacctcataacctgacagcgagt
tgtccagacctctcttggctcctactgttctgtggtctgggtatgatggtgttctcagta
tgcatgtttctggtcactgtcataatttgcatcagacaaaaaaacttcatgcgtaaaaaa
atgcataagagagatcacgcaaacgaacatgaactgaagcatttaaattaa
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