Ictalurus punctatus (channel catfish): 108268404
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Entry
108268404 CDS
T04658
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108268404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108268404
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
108268404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
108268404
NCBI-ProteinID:
XP_017328846
Ensembl:
ENSIPUG00000003666
UniProt:
A0A2D0RFE1
LinkDB
All DBs
Position
8:complement(29991951..30005777)
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AA seq
314 aa
AA seq
DB search
MNSMKDPLSLDHHHHHHHHHHISGGSKLISALHMASKQGVEGNTDTHSPEAAEKEKVQSK
NEDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV
WFKNRRAKWRKRERNQQAELCKNGFGAQFNGLVQPYDDVYPSYTYNNWAAAAKGLAPASL
SAKSFPFFNSMNSISPLSSQAMFSAAPPPPPPPPPAPSSISSMSMSMSSGMAVPTSGLNG
LNNLNNLGNASLNSPAAGCPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYAGVQNAA
TNLSACQYAVDRPV
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgatgaaggatcctctgagtttagatcatcatcatcaccaccatcatcaccac
cacatctcaggaggttccaaactgatctcggctctccacatggcctccaaacagggagtg
gagggaaacacggacacacacagtcccgaggccgcagaaaaagagaaagtccagagtaaa
aacgaagactcctctgatgatccgtcgaagaagaagcggcagcggcggcagaggacgcac
ttcacgagccagcagctgcaggagctcgaggccacattccagcggaaccgttacccggac
atgagcacgcgcgaggagatcgccgtctggaccaatctcacggaggcgcgagtccgggtt
tggttcaagaaccgtcgcgctaaatggcggaagcgcgagcgcaaccagcaggccgagctc
tgcaagaacggcttcggcgcgcagtttaacggcttggtgcagccctacgacgacgtgtac
ccgagctacacgtataacaactgggcggcggcggctaaagggctggctccggcctcgctc
tcggccaagagcttcccgttcttcaactcgatgaactccatcagccctctgtcgtcccag
gcgatgttctccgccgcgccgccgccgccgcctccgcctccgcccgcgccgagctccatc
tcctccatgagcatgagcatgagctccggcatggccgtgcccacgtccggtctcaacggc
ctcaacaacctcaacaacctcggcaacgcgtcgctcaactcgcccgccgcagggtgtccg
tacgccccgccgactccaccctacgtctaccgggacacgtgtaactccagcctggcgagt
ctgagactcaaagccaagcagcactcgagcttcggctacgcgggagtccagaacgccgcc
acgaacctcagcgcgtgtcagtacgccgtggacagacccgtgtag
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