Ictalurus punctatus (channel catfish): 108268519
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Entry
108268519 CDS
T04658
Name
(RefSeq) nuclear pore complex protein Nup160
KO
K14303
nuclear pore complex protein Nup160
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108268519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108268519
03036 Chromosome and associated proteins [BR:
ipu03036
]
108268519
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108268519
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108268519
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_NUP160_120_M
Beta-prop_Nup120_160
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
TPR_2
CvfB_1st
TPR_1
Motif
Other DBs
NCBI-GeneID:
108268519
NCBI-ProteinID:
XP_053538114
Ensembl:
ENSIPUG00000008082
UniProt:
A0A9F7TM99
LinkDB
All DBs
Position
8:561039..572482
Genome browser
AA seq
1408 aa
AA seq
DB search
MRHIRCSCARKMAAALERSFIEICGFERETVSRFRDLTINLGVSATPGGGRLADSAGAFS
YEESGKLLSLTSNRFIHWSTSGDTVQLVEQSLDVNLLNNSLRLKILNCAVLPGGVHIHET
LNNVTVLIVTNQSVHRMVLPHPTRMYHSEPVAELQMQSVFTDVGKVCVQDAVHSFTLSFT
QSPVTSSTWLSTHGHALFALATPTGGITIVTLPPCDQQGSLSVMELKQSSVMQRLAGWVP
SAIRGDQSPCDLAVSLSVWPMEDDTFIFALCQDHKLRVWSYKEQQCVLVADVLDYVPVGR
AELRNSVGVSHRLRVCVSGSAGVCVCVYVAAPQRSQFCVLQLGSSNNVRYSLEHISTIYS
TQETLVDFVLTSTDIWALWVDDDNQTVVKYINFEHNAAGMWNQVFVQPAPEEEVHIGAEQ
DPRETYLDVLFSPLRFTAAAIVKALQIYKRGMERFLDLTWETLKKEVTLAVENELQSSVT
EFEFSQEDYRMLQVEFWSKFYACCLQYQEALSTPLALHVDQSTAMVCLLKKGFVSFLLPC
FAVDHLYLCSDEYLFSEEETPVVDEPELGGDVLQLVQCLRLVSECLQGQMACVMDRAVEM
LMSPERAAEQVLENLLANDNNDLIDEITNKMQDVRNPVAAMSTLLRELDLEAEFDTPDTV
LSHTGRSLNVRLSLSQLYSSSVAVSVVCQAVCHMTMTRALICRDLLILQHLYLRLGDNVL
LADNAQYLLLQQDLIPRCSHLLCSYHLLRQLSQTLASPVPLDTLDANLQHLSVLKLSDST
VSTANRSVLSPQTVVELFYQNIARKSIVLQLFGQREAPESHITSLHWNQLISSVVHLLTQ
LLWPSNPNFLFPECMMGNCQYTQLQEYVRLIGPWCQANVGSCRFVLGQAYLACGEGQKAL
QCFQEAAPEVEKEEFLKRLTGSEDEEAGTTAPRLLYYNKVLRLLEDIGLPDLVIQLATLA
VSEAVNDQRSQAALWTRIFKHHLDLGHNREAYEALTQNPDPSRQLDCLRQLVVVLCERAQ
LHDLIQFPYINLHEEVVGIIESRARAVDLMSHNYYELLYAFHINRHNYRKAGTVMFEYGM
RLGREVRTLRGLQKQVNCYLSALNCLRLIRPEYAWIIRPSSGPSCERPGTSPKRSHDGDL
APPPVSRHIEILELKDLEKEYVLARCRLTLAQQDPSSAAIAGSASAVDMVSLLVQAGLFD
TAALLCETFKLPLTPVFEGLTFKCIKLQYGSDQSQNEAWNWLSANQLPSLITTKESSATD
EAWRLLASYLEKHQSQNAQHHRCVINRLLSHGVPVPDWLLNAYKEVDAASLLRLYLNYDL
LDSAAELVMEYVDALLGKGHQYFGIEMPLSVTAPLVWLPYTSIDQLLHSLKESQTPSNTQ
VYEKLRMKLAEYHRQVERSSKHRLQVPA
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcacatccggtgttcttgcgcgcggaaaatggcggctgccttggagagaagcttt
atagagatctgcgggtttgagagggagacagtttcccggtttcgggatctcaccattaat
ctgggtgtgagtgcgacccctggtggcgggaggcttgcagacagcgctggggcgttctct
tatgaggagagtgggaaactgctgtctctcaccagcaacagattcattcactggtccaca
tcaggagacacagttcagctggtggaacagtctctggacgtgaacctgttgaacaactcg
ctacgtcttaagatcctgaactgcgccgtgcttcccggaggcgttcacatccacgagaca
ctcaacaatgtcacagtcctcatcgtcaccaaccagtcggtgcacaggatggtgctgccc
caccccacacgcatgtaccacagcgagccggtggccgagctgcagatgcagagtgtgttc
actgacgtggggaaggtgtgtgttcaggacgccgttcactccttcactctgtcgttcact
cagagccccgtcacatcatccacctggctcagcacgcatggtcatgccctttttgctttg
gccactcccaccgggggcatcaccatagttactttacccccctgcgatcagcagggttca
ctgtcagtgatggagttaaagcagagttcagtcatgcagagattagcaggctgggtcccc
agcgccatcagaggggaccagagcccgtgcgacctggcagtgagtttatccgtgtggccg
atggaggacgacaccttcatcttcgctctgtgtcaggatcataaactgcgcgtctggtcg
tataaggagcagcagtgtgtgttggtggccgatgtgttggactacgtccccgtgggtcgg
gccgagctgaggaacagcgtgggcgtgtctcaccgtctgcgtgtgtgtgtgtccggttct
gcaggcgtgtgtgtgtgtgtttacgttgccgctccgcaacgcagtcagttctgcgttctg
cagctcggttccagtaacaacgtgcgctacagcctagagcacatctctactatctacagc
acacaggagactctagtggactttgttctaacctccactgatatttgggctctgtgggtg
gatgatgataaccagactgtggtgaagtacatcaactttgagcataacgcagcaggcatg
tggaatcaggtgtttgtgcagcccgctccagaggaggaagttcacattggagctgagcag
gatcctagagagacgtacctggatgttctgttttctcctctgcgcttcactgctgctgct
atcgtaaaggcactacagatttacaaacgtggcatggagcgattcctcgacttaacatgg
gaaacactaaagaaagaagtcactcttgctgtagagaatgagctccagagcagtgtgacg
gagttcgagttctctcaggaggattaccgcatgctgcaggtggagttctggtccaagttc
tatgcctgctgtctacagtaccaggaggctctgtccacccccctcgccctgcacgtggac
cagtccacagctatggtctgcctgctcaagaagggcttcgtgtcgttcctgttgccctgc
tttgccgtggatcacttgtacctgtgctctgatgagtacctgttctccgaggaggaaaca
cctgtagttgacgaaccggagctgggcggggatgtcctgcagctggtgcagtgtttgcgg
ttggtgagtgagtgtttgcaggggcagatggcgtgtgtgatggatagagcggtggagatg
ctgatgtctccagagagagctgcagaacaagtgctggagaacctgctggctaatgacaat
aatgatttaattgacgaaatcaccaacaagatgcaggatgtgcgaaacccagtggctgcg
atgagcaccctgctccgagagctcgacctggaggcggagttcgacacgcccgacacagtg
ctgtcacacacaggccggtctctgaacgtgcgtctcagtctgtctcagctgtacagcagt
agcgtggcggtgagcgttgtgtgtcaggccgtgtgtcacatgaccatgactcgagcgctg
atctgcagagacctgctcatcctgcaacacctgtacctgcgcctcggagacaacgtgctc
ctggcagacaacgctcagtatctgcttttgcagcaggatctgatcccacgctgttcacac
ctgctctgcagttatcacctgctcagacagctcagccagacccttgcctcacctgtaccg
ctcgacacactagacgctaacctgcagcacctgtccgtgttgaagctgtccgattccacg
gtgagcacggctaacagatcagtgttgagtcctcagactgtagtggagctgttttatcaa
aacatagcacgtaaatccattgtgctgcagctgtttggccagagggaggcgccagagagt
cacatcaccagcctgcactggaaccagctcatctccagtgtagtgcatctactgacccag
ttactgtggcccagtaaccccaacttcctgttcccggagtgcatgatgggaaactgccag
tacacacagctccaggaatacgtgcgtctgatcgggccgtggtgccaggctaacgtggga
tcgtgtcgatttgttctgggtcaggcgtacctggcctgtggagaaggtcagaaggcgctg
cagtgtttccaggaggcagcacctgaggtggagaaggaggagtttctgaagagattgaca
ggttcagaggacgaggaggcggggactacagcaccacgattactctattacaacaaggtc
ctaagactcctggaggacattgggttgccagatcttgtgattcagttagccacactggcc
gtatccgaggctgtgaacgaccagcgcagtcaggcagctctgtggacgcgtatttttaaa
caccatctggatctcggtcacaacagggaggcgtatgaagctctgacccagaaccccgat
cccagcaggcagttggactgtctccggcagctggtggtggtcctgtgtgagcgcgctcag
ctacacgatctcatccagttcccttacatcaacctgcatgaggaggtggtggggatcatc
gagtctcgtgcccgtgctgttgacctgatgtcccataattactacgagctgctctacgcc
ttccacattaaccgccacaactacaggaaagccggtacagtgatgttcgagtacgggatg
cgtctgggtcgtgaggttcggactctgaggggtctccagaagcaggtgaactgctacctg
tctgctctgaactgtctgcgtctgattcggcccgaatatgcctggatcatccggccttcg
tccggaccttcttgtgagaggccaggcacgtcacccaaacgcagccatgatggggatttg
gctccgcctccagtgagtcgtcacatagagatcctggagctgaaggatctggagaaggag
tatgttctcgcacgttgtcgtctcacactcgcgcagcaggacccgtcctcggcagctata
gcaggcagtgcgtcggcggtggacatggtgtctctgttggtgcaggccgggctgttcgac
acagcggcgttgttgtgcgagacgtttaaactccctctcacacccgtcttcgagggactc
accttcaagtgcatcaagctgcagtacggatcggatcagagccagaacgaggcgtggaac
tggttatcagccaatcagctgcccagtctcatcaccactaaagagtccagtgcaacagat
gaagcgtggagacttctggcgtcgtacctggagaagcatcaatcccagaatgctcagcat
catcgctgtgttattaacaggctgctgtcacacggtgtacctgttcctgattggctactt
aacgcatataaggaagtggatgctgcatccctgctgcgcctctacctgaactacgacctg
ctggactcggccgctgagctcgtgatggagtatgtggacgctctactggggaagggacat
cagtatttcggaatagagatgccgctgagtgtgacggcgccactcgtctggctgccgtac
acctccatcgaccagctgctgcacagcctgaaagagagtcagactcccagcaacacacag
gtgtatgagaagctgcggatgaagctggcggagtatcacagacaggtggaacgcagcagc
aaacaccgactgcaggttccggcctga
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integrated database retrieval system
