KEGG   Ictalurus punctatus (channel catfish): 108268614
Entry
108268614         CDS       T04658                                 
Symbol
rack1
Name
(RefSeq) guanine nucleotide-binding protein subunit beta-2-like 1
  KO
K14753  guanine nucleotide-binding protein subunit beta-2-like 1 protein
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108268614 (rack1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    108268614 (rack1)
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     108268614 (rack1)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   108268614 (rack1)
  Exosomal proteins of colorectal cancer cells
   108268614 (rack1)
  Exosomal proteins of bladder cancer cells
   108268614 (rack1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_IFT140_1st eIF2A Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_WDR75_2nd PROPPIN Cytochrom_D1 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 Env-gp36 DUF1416
Other DBs
NCBI-GeneID: 108268614
NCBI-ProteinID: XP_017329153
Ensembl: ENSIPUG00000018129
UniProt: A0A2D0RF53
LinkDB
Position
8:27041545..27048141
AA seq 317 aa
MTEQMTVRGTLKGHSGWVTQIATTPQFPDMILSASRDKTVIMWKLTRDETNYGVPQRALR
GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQI
VSGSRDKTIKLWNTLGVCKYTIQDESHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLA
NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALC
FSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTSSKAEPPQCTALAWSADGQTLFA
GYTDNLIRVWQVTIGTR
NT seq 954 nt   +upstreamnt  +downstreamnt
atgacggaacagatgacagtgagagggacactgaagggccacagcggatgggtcactcag
atcgccaccacgccgcagtttcccgacatgatcctgtctgcgtcccgggataagaccgtc
atcatgtggaagctgacccgagatgagacgaactacggcgtcccccagcgtgctctgaga
ggacactcgcactttgtgagcgacgtggtgatctcctccgatggccagtttgctctgtcc
ggctcgtgggacggcacgctgcgcctctgggacctgacaactggcacgacgactcgccgc
tttgtcggccacaccaaagatgtcctgagcgtggctttctctgcggataaccgtcagatc
gtgtccggctccagggataaaaccatcaagctgtggaacaccctgggagtgtgcaagtac
accatccaggacgagagccacacggagtgggtgtcctgcgtgcgattctccccgaacagc
agcaaccccatcatcgtgtcctgcggctgggacaagatggtcaaggtgtggaatctcgcc
aactgcaagctgaagacgaaccacatcggccacacgggctacctgaacaccgtcaccgtg
tctcctgacggctcgctctgtgcctccggaggaaaggacggccaggccatgctgtgggat
ctgaacgagggaaagcatttgtacactctggatggaggagacacgatcaacgctttgtgc
ttcagccctaaccgctactggctctgtgccgccaccggtcccagcatcaagatctgggat
ctcgaggggaagatcattgtcgatgaactgagacaggaagtgatcagcaccagcagcaaa
gccgagcccccacagtgcactgctctggcctggtctgctgatggacagactctcttcgct
ggctacacggataatctgatccgagtgtggcaggttaccattggaacacgataa

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