Ictalurus punctatus (channel catfish): 108268675
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Entry
108268675 CDS
T04658
Name
(RefSeq) UV-stimulated scaffold protein A
KO
K23720
UV-stimulated scaffold protein A
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108268675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108268675
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
108268675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
Augurin
DUF1195
Motif
Other DBs
NCBI-GeneID:
108268675
NCBI-ProteinID:
XP_017329244
Ensembl:
ENSIPUG00000016843
UniProt:
A0A2D0RH69
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All DBs
Position
8:complement(4490297..4517111)
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AA seq
721 aa
AA seq
DB search
MDQEMRDKLSELVEELTTSGEPQLNQAKMKEVKKICKLSNDYIDHFYHLVMTQLNQDHAE
VRFSAFQMAAELFSRSHHFRALLVTNLQEFLELTVETDVEQPLPPPKEVARKLKTQAIQT
VQAWQTTYGEAYKKLALGYHFLKQVKKVDFQDVEARTLAERRRREEKQQRLERIYKGKLE
KAKQEMEEMASEIEDSLTEMNNCMTLIMPDTFNFFSQELTAVSETSTEVSLQDTDVCDEQ
PCCSKDLNKEGGRMAGATKGDEEEEDSSAESDTEEGVDKDVFIRSSGLMSHTYRLDLKVS
SDLNVKETEENEAVVNTMRDLHRLISSRYLPAIQSWIQVFTKVGVEEQLMRRATDLKKSL
EMVLRKHDELHIDYKARQRRVLKAGEEDDDDFEEVPEKEGYEPHIPEHLRAEYGLDPISS
PSTSVAELKPSKPVERPIAPPMPSTLGRLKSRRYEEELDPTCAAATLRILKEKVATATCT
SVSGGSPEPATSCSSEQTEEKEKAPVVSFGLDLYYWGEEQPTAGKIIKNISQHQFWVPHE
VEEEVENEELSAQMKSRYITFAGRFQPVEHKCKAPLPNGSLCERQDRVKCPFHGLIIPRD
EIGRPVNPEDAARLEKEEYKRREEQPDWRDPELMREIEAATGEDLGSSKTYGKGKKAGKG
KGKKRKHPNLTDLKQTANTSRSRLEKKVFNKSSMKRIAAVMNKMDTRKHEKFANQFNYAL
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaaatgcgggataagctgtccgagttggtggaggagttgactacctctgga
gaaccccagctgaatcaagcaaaaatgaaagaagtgaagaagatttgcaagctttccaat
gactacatcgatcacttctatcacctcgtcatgacccagctaaatcaggatcacgctgag
gttcgcttctctgccttccaaatggctgctgagcttttcagccgttctcatcacttcaga
gctctcttggtcactaacctgcaggagttcctggagctaacggtagagacagacgttgag
cagccgttgcctcccccgaaagaagtagccaggaagctgaagacccaagccatccagact
gtacaggcctggcagaccacgtatggggaagcctacaagaagctggctttgggttatcat
tttctgaagcaagttaaaaaggtagactttcaggatgttgaagcaagaacactggctgag
cgacggagacgggaggaaaaacagcaaagactggagcgaatttataagggaaagcttgaa
aaggccaagcaagagatggaagaaatggcttccgaaattgaggactctctgaccgagatg
aacaactgcatgaccttgatcatgccagacactttcaatttttttagccaagaactgaca
gcggtcagtgagacgagcactgaagttagtctccaggacacggatgtctgcgatgaacag
ccttgctgcagcaaagaccttaacaaagagggtggaaggatggcaggggcaactaaaggt
gacgaggaagaagaggactccagtgcagagagcgacacggaggagggtgtggacaaggat
gtgtttatccgcagctctgggctgatgtcccacacctatcggctagatctgaaggtgtcc
tcagatttgaatgtgaaagagactgaggagaatgaagcagtagtgaacaccatgagagat
ctgcacagactcatcagtagtagatacctccctgccatccaatcctggattcaggttttt
acaaaagttggtgtggaggagcagctgatgaggcgagccacggacctaaaaaaatctctc
gagatggttttgaggaaacatgatgagcttcatatagactacaaagcaaggcagagaaga
gtgttaaaggctggagaggaggacgacgatgattttgaagaggtgccggagaaggagggt
tatgagccacatatccccgagcatctgcgggccgagtacggtcttgatccgatatcttct
ccatccacctctgtggctgaactaaagccatcaaagccagtggagagacctatagctcca
cccatgccctcaactctcggccggcttaagagcaggagatatgaagaagagctggaccct
acatgtgcagctgccacgctgcgtatcctaaaagagaaagtggccacggcaacatgtaca
agtgtgtctggaggctctcctgaacccgccacgagctgcagcagtgaacagacggaggag
aaggagaaagctcctgtcgtttcttttggtctggacctctactactggggagaggagcaa
cccacagctggcaagatcatcaagaacatctcccagcaccagttctgggtgcctcacgaa
gtggaggaggaggttgagaacgaagagctgtctgcacagatgaagtccaggtacattacc
tttgctggacgtttccaacctgtagagcacaagtgcaaagccccgctgcctaacggctca
ttgtgtgaacgccaggacagagtcaagtgtccgttccatgggttaataattcctcgggat
gagatcgggaggccggttaatccagaggatgcagctcgtctggagaaggaagagtataaa
cgcagagaggagcagccagactggcgagacccagagctcatgagggagattgaagcagct
acgggtgaagatctgggctcttctaaaacttacggaaaaggcaaaaaggctgggaaagga
aagggaaagaaaaggaagcatcccaacctcacagacctgaagcaaaccgccaatacttct
cgctcaaggctagaaaagaaggtctttaataagagctccatgaaacgaatagcggcggtg
atgaacaagatggacacgaggaagcatgagaaattcgccaaccagtttaactacgcctta
aaataa
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