Ictalurus punctatus (channel catfish): 108268788
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Entry
108268788 CDS
T04658
Symbol
acanb
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108268788 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108268788 (acanb)
04091 Lectins [BR:
ipu04091
]
108268788 (acanb)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108268788 (acanb)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108268788 (acanb)
Lectins [BR:
ipu04091
]
C-Type lectins
Lecticans
108268788 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
UL45
I-set
PGDH_inter
HRM
Motif
Other DBs
NCBI-GeneID:
108268788
NCBI-ProteinID:
XP_053538247
Ensembl:
ENSIPUG00000003438
UniProt:
A0A9F7TLY8
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All DBs
Position
8:complement(16546869..16560137)
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AA seq
1217 aa
AA seq
DB search
MTAFLLLCACISISSAAVMFGQINDEDSTLSVSIPLEQPLRPLLGGKMVIPCYFRDNAIH
DPGAPTIGPLSQRIKWSYIHKGKISLILVAIGGIVHTETDYLDRVTMVNYPSVPTDVTIE
ISELRSSDSGTYRCEVMQGIEDNYDSVEMHVQGIVFHYRAITSRYTLTFDMAKAACIQNS
AIIATPEQLQAAYDDGFHQCDAGWLSDRTVRYPIHEPREPCYGDKEKYPGVRTYGIRDDN
ETYDVYCFAEKMSGRVFYSMSMKKFTFYEASEQCGKLGAQLATTGQLYLAWKAGMDVCNA
GWLADGSVRYPINIARPQCGGGLLGVRTVYRFQNQTGYPHPDSHYDAICYEGEDKVPSPY
PPVPELRATSDSRSPLPDIHMTTDFQSPVPDIDMTTDFHSQVPDIYMTTDTEFSVGTITS
SPVAYPESVTTEGEVRGEFVTHEPWVTTMVLPPSFSPTVMETVTEDVVVVAAAQPVLVYE
VPRDNISIVSEFKGVVFHYHSGSEHYAFTFHEAQQTCYRQGAEMATPRQLQAAYEAGLHH
CNAGWLQDQSVRYPNAYPEECSGDQKNASGVISHGLRPTHERYDVYCYINQIQGDVFHVT
SLANFTFQEAADSCHSHNATLASTGELYAAWSQGFHNCNPGWLSDGSVRYPVQTLSCGVN
KTGIYTIYANPNQTGFPDPYSRYDAYCIRESVYGSGSGLPSGNISGSGLPSAEGSSSGFP
SGDETGSGLSSAEGSSSGFPSGDESGSGIPSAEGSSSGFLSGDESGSGVPSAEGSSSDFP
SGDVSGRTISSGGVSGSGWSGDGSSIFVIFKESVDILSAEGSAIGSSPEAAEGSTVFFAS
GMESGNMSGDHSGSGDVSGSGHYSGSGGLPSGSGSGDMINLVDNLMTNMPFPHPKTEQEI
VGRETEVSGFSGLHSDEITSGSELSGILIDDVMSGSGFNGVPSGDIMSGIGFSGVTSGDV
ISGSGGLEEVNVTDVSAINTTSTSTLTFTSSPLVLHLTPTTMDQPTVTEAAQGCADGWLE
FEGSCYIQFRERKNWTNAEQHCRELNSHLLSITSKQEQIFVYNHMRDDQWIGLTDRDKQN
EFRWTDESPLEYENWRPTLSNSYFDAANECAAMTWHELGQWTSVPCNHHLVFTCKIKSVK
CSTPPEVENARMLGNIWGTYPVNSMIRYQCDPGFTQRRHSVIRCMPDGQWKEPTVECVKR
KRLQKRSLKRHSVSSRT
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgactgcttttcttctactgtgtgcctgcatcagtatctcatctgcagcagtaatgttt
ggacaaataaatgatgaggacagtacacttagtgttagcatccccttggagcagccgctg
cgccccctgttaggcgggaagatggtcatcccttgttatttccgggacaatgcaatccat
gaccctggagcccctaccattggtcctctatcacaacgcatcaagtggagctacatccac
aaaggcaaaataagcctcatcctggtggcgattgggggaatagtgcacactgagacagat
tatttggaccgggtgaccatggtgaactatccctcagtacccacagatgtcaccatagag
atctcagagctgcgctccagcgattctgggacataccgatgtgaggttatgcagggcatt
gaggacaactatgactcggtggagatgcatgttcaaggcatcgtgttccactacagggcc
ataaccagccgctacaccctgacctttgatatggcaaaggcagcctgcatccagaacagt
gccattattgcaacccctgaacagctgcaagctgcttacgatgacgggtttcaccagtgt
gatgcaggttggctttcagatcgaactgtcaggtatcccattcatgagcccagggagcct
tgttatggagacaaggaaaagtatccaggtgtacgaacatatggaatcagagatgataat
gagacctatgatgtgtactgctttgcagagaagatgtctggcagagtcttctactccatg
tcaatgaaaaagtttacattttatgaggcatctgaacagtgtggaaaacttggagcccaa
ttggccaccacagggcaattgtacttggcctggaaagctggaatggatgtgtgcaatgct
ggctggttagcagatgggagtgtgagataccctatcaacattgcccgccctcagtgtgga
gggggtctcctgggtgtacggactgtgtaccgttttcaaaaccagacaggttacccccac
ccagactcccactatgatgctatctgctatgagggagaagataaagtacccagtccttac
cctccagtacctgaattacgcgcaacctcagactcccgctccccattacctgatattcac
atgaccacagacttccaatccccagtacctgacattgacatgaccacagacttccattcc
caagtacctgatatttacatgaccacagacactgagtttagtgtgggcaccatcacctcc
agtccagtcgcctatcctgagagtgtcaccactgagggtgaagttcgaggggagtttgta
actcatgagccctgggttaccaccatggtactgcctccttccttctctccaactgtaatg
gagactgtgacagaggatgtggtagttgtagctgcagctcagccggttctggtctatgag
gtacccagagataatatcagcattgtttcagaatttaaaggagtggtgttccactatcac
tcaggttcagagcactacgctttcacctttcatgaggctcagcagacctgttacaggcag
ggagctgaaatggccacaccaaggcagttgcaggcagcatatgaggctggcctgcatcat
tgcaatgctggctggctccaggaccagtctgtcagataccctaatgcctatcctgaggag
tgctctggagatcaaaaaaatgcttctggggtgatctctcatgggcttaggcctacacat
gaacgttatgatgtgtattgctacatcaaccaaatacagggggacgtcttccatgtcact
tccctggcaaactttaccttccaagaggcggcagattcctgccatagccacaatgccacc
ctggcttccacaggggagctgtatgcagcctggagtcagggcttccataactgcaaccca
ggctggttatctgatggcagtgtccgctacccagttcaaactctcagctgtggtgtaaat
aaaacaggaatttacaccatttatgctaaccctaaccagactggattcccagatccttac
tccagatatgatgcttactgtattagagaaagtgtttatggatctggcagtgggttaccc
agtggaaatatatctggcagtggccttcccagtgctgaaggttccagcagtggcttcccg
agtggagatgaaactggcagtggcctttccagtgctgaaggttccagcagtggcttcccg
agtggagatgaatctggcagtggcattcccagtgctgaaggttccagtagtgggttcttg
agtggagatgaatctggcagtggcgttcccagtgctgaaggttccagcagtgacttccct
agtggtgatgtgtctggcaggacaatttccagtgggggtgtgtctgggtctggttggagt
ggtgatggctcaagcatctttgtcatcttcaaggagagtgtagacattctctcagcagag
ggatctgccataggaagctctccagaagcagcagaagggagtacagtattttttgcctcg
ggaatggaatctggaaacatgagtggggaccactcaggatcaggtgatgtgtctggatct
ggacattatagtgggtctggtggtctgccatctggatctggaagtggagatatgatcaac
ttggttgataatttaatgaccaatatgccctttccacatcctaaaacagagcaagaaatt
gttggaagggagacggaggttagcggattcagtggactccacagtgatgaaatcacaagt
ggctctgaattgagtggcatactgattgatgatgtcatgagtggttctggattcaatggt
gtgcccagtggtgatatcatgagtggcattggatttagtggagtgaccagtggtgatgtc
ataagtggctctggaggtttggaggaggttaatgtcactgatgtgtcagctatcaacacc
accagtacatccacattaacatttacatccagtcccttggtattgcacctgacaccaact
accatggaccagcccacagttactgaagcagcacagggatgtgcagatggctggctggaa
tttgagggcagctgctatatccaattcagagaaagaaagaattggacgaatgccgaacag
cactgccgagagctaaattcacatctgcttagcatcacttccaagcaagagcaaatattt
gtctacaatcacatgagggatgaccagtggattggactcactgacagagacaagcaaaat
gagttccgctggacagatgaaagccctttggaatatgaaaactggagacctaccctgtca
aatagttattttgacgctgcaaacgaatgtgcagctatgacttggcatgagcttggccaa
tggactagtgtgccttgtaaccaccatctggtcttcacatgcaaaattaaatctgtcaaa
tgctccacacctcctgaggttgaaaatgccaggatgttaggaaacatctggggcacctac
ccagtcaactctatgatccgctaccagtgtgaccctggcttcacacagcggcgccattct
gtgatacgctgcatgccagacggccagtggaaagagcctacagtggaatgtgtaaaaagg
aagagactacaaaaaagatccctcaagaggcattcagtcagcagccgaacatga
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