Ictalurus punctatus (channel catfish): 108268791
Help
Entry
108268791 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108268791
04121 Ubiquitin system [BR:
ipu04121
]
108268791
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108268791
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108268791
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108268791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
zf-RING_2
zf-C3HC4_4
Invasin_D3
zf_RING_Vps8_fungal
Ig_GEX2_N
DUF4094
Motif
Other DBs
NCBI-GeneID:
108268791
NCBI-ProteinID:
XP_017329474
Ensembl:
ENSIPUG00000009891
UniProt:
W6AC50
LinkDB
All DBs
Position
1:18164043..18194133
Genome browser
AA seq
809 aa
AA seq
DB search
MASFPDSEVQTCPLCKELCGSSAPISSSSSTSSSSSQTSNSSTTSSTRRLHVLPCLHAFC
RSCLESLRSNGDPLKLRCPTCDQKVPMSESGVDALPSSNFLFSNLLDVVVSAEDQGTSSC
IGSGGLLRAQHVLSEPQCSSCDEGNGASSHCLDCQEYLCDNCVRAHQRVRLTKDHFIESL
AENLHMPARAGGHGTPLSLSQAFHNFSLLPVFQDRMDYCQQHDNAVLRFFCESCSVPICR
ECSVGRHVGHSVSYLQDVLHDSRALTIQLLADAQQGRQAVQLSIEKAQAIAEQVELKAKV
VQSEVKTTTLRHKKALEERECELLWKLEKIRQVKAKSLYLQVEKLHQNLTKLDSTIATVT
KVLEEGRNIDILLAREHMLNQLQELKALRCILQPQEDDRIMFTPPDQALLIAIQSMGLIS
SGAFASATKAHGEGLKRALQGKLASFTVVAYDHDGEPRLSGGDGVSVVLMGPEGNLSSAD
VSDQQDGTYTVSYLPKSEGEHLLSVLICNQHIEGSPFKVMVKSGRSYGGIGLPVASFGGE
GDGDGQLCRPWGICVDKEGYVIVADRSNNRIQIFKPCGTFHHKFGTLGSRPGQFDRPAGV
ACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDT
RNHRVQLFGPDGVFINKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDCQ
SARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNGNFLCKFGTQGSGFG
QMDRPSGIAVTPDGMIVAVDFGNNRILIF
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgttccccgattccgaagtgcagacgtgtccgctgtgtaaggagctgtgtggc
tcctctgctccgatctcctccagttcatctacctcctcctcgtcatcgcaaacctccaac
tcgtctactacctcgtccacacgaagactgcacgtcctgccgtgcctgcacgccttctgc
aggtcgtgcctggagagcctgaggagcaacggagacccgctcaagctgcgctgcccgacc
tgcgaccaaaaagtacccatgtccgagtcgggcgtggacgcgctgccgtcgtccaacttc
ctgttcagcaacttgctggacgtggtggtgtccgccgaggatcagggcacgagcagctgc
ataggcagcgggggtcttctccgtgctcagcacgtgctctcggagccgcagtgcagctcg
tgcgatgaagggaacggcgcaagctcgcactgcctcgactgccaggagtacctgtgcgac
aactgcgtgcgcgcgcaccagcgcgtccgtctcaccaaagaccacttcattgagagcctg
gcggagaacctgcacatgccagcacgcgccgggggccacggcacaccgctcagcctctcc
caggcgtttcacaacttctcactgcttccggttttccaggaccgaatggactactgtcag
cagcacgacaacgcggtgctgcgttttttctgcgagagttgctctgtgcccatctgtagg
gagtgcagtgtgggaagacatgtgggccacagtgtatcctacctgcaggacgtgctgcat
gactccagagcgctcaccatccagctgctcgcagatgcacagcagggacgacaggccgtg
cagctaagcattgagaaagcgcaagccatcgctgagcaggtggaactgaaggccaaggtg
gtgcagtcagaggtgaagactaccactctgcgtcacaagaaagccctggaggagcgcgag
tgtgagctgctatggaagttggaaaagatccgccaggtgaaggccaagtccctgtacctt
caggtagagaaacttcaccagaacctcaccaagctggacagcaccattgccacagtgaca
aaggtgctggaggaaggtcgcaacatagacatcctactagcacgtgagcacatgctgaat
cagctgcaggagctcaaagcactgcgctgcattctgcagccacaggaggatgaccgcatt
atgttcacgcctccagatcaggcgcttctgatcgccatccagtccatgggcctgataagc
agtggagccttcgcatcagccaccaaagcccatggggaaggtctcaagagagctctgcag
ggaaaactggcttcctttacagtagtggcatatgaccatgatggagaaccacggttgtct
ggtggagatggtgtatcagtggtcttgatgggtccagagggaaacctctctagtgctgat
gtgtctgaccaacaagatggtacctacacggttagctacctgcccaagagtgaaggagag
catcttctttctgtacttatctgcaaccagcacattgagggaagtcccttcaaagtcatg
gtcaaatctggccgcagctacggaggtattggtctgcctgttgcatcctttggtggagag
ggtgatggtgatggacagctgtgtagaccttggggcatctgcgttgataaggaaggctat
gtgatcgtggctgaccgaagcaacaatcgcatacagatcttcaagccgtgtggcaccttt
caccacaaatttggcacgttgggctcacgacctggccagtttgaccgacctgctggggtt
gcctgtgacagccagagaagaatcattgtggctgacaaggacaatcaccgcatccagatc
ttcacctttgatgggcagttcctcctcaagtttggtgaaaagggaaccaaaaatgggcag
ttcaactacccttgggacgtagctgtcaattcagagggaaagattctcgtctcggacaca
cgcaaccaccgggtacagctgttcggccctgatggggtgttcatcaacaagtatggtttc
gaaggtgccctctggaagcatttcgactcgcctcgaggagttgccttcaaccaagaaggt
cacctagtggtgactgacttcaacaatcatcgtctgctcgtcatcaggcccgactgccag
tctgctcgctttcttggctctgagggaacaggtaacgggcagttcttgcgtccacaaggc
gtagccgtggaccaggaggatcgcattattgtggctgactcccgtaaccatcgtattcag
gtgtttgaacccaatggcaacttcttatgcaagtttgggactcagggtagtggcttcggg
cagatggatcgcccatcaggtatagccgttacccctgacggaatgattgtagccgttgac
tttggaaacaatcgaatcctcatcttttga
DBGET
integrated database retrieval system
