Ictalurus punctatus (channel catfish): 108268804
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Entry
108268804 CDS
T04658
Name
(RefSeq) U7 snRNA-associated Sm-like protein LSm11
KO
K25592
U7 snRNA-associated Sm-like protein LSm11
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108268804
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
108268804
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
CPDase
Motif
Other DBs
NCBI-GeneID:
108268804
NCBI-ProteinID:
XP_017329497
Ensembl:
ENSIPUG00000018086
UniProt:
A0A2D0RG25
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Position
8:6283208..6290483
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AA seq
330 aa
AA seq
DB search
MEESEREVISEISCDHKVSLTAYKQQDTGGKDGADTDKKLDISSDQFDPLLALYSSDVPL
PYPNIRCFNNLAEYESFMKGGRGRAKPENVEKRIRKAKRGVADPERIERLKKLMVKNPCG
GEEGESGVKRPAKHRAPKNVLTRMPLHEGSPLGELNRCVQQRLRVKVHIRSFKGLRGVCT
GFLVAFDKFWNLAMVDVDETYREPLLGEAFYHEKALTVTRLFQKLQVQAASGKAAEAETS
KADEPSAEPHVTTSSMLGVRASRQAAERLARSVNVLAVTSTDVPHISAAGSEQRQKMSKP
RVEYGRVRTRHVNQLFIRGENVLLVNIQQE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaagtgagagggaagtaataagtgaaatcagttgtgatcataaagtaagttta
accgcatataagcagcaggacaccggcggaaaagatggtgcagatacggacaagaagctg
gacattagttcagatcagtttgatccgctacttgccttgtattcttcagacgttcctctg
ccttacccgaacatcaggtgctttaacaacctcgcggagtatgagagctttatgaaaggc
gggcgtggaagggcgaaacctgaaaatgtggagaaaaggatccggaaagcgaaaagggga
gtcgcggatcctgagagaattgagaggctgaaaaaactcatggtgaaaaatccgtgtgga
ggagaggaaggagagagcggagtgaagagacctgctaaacacagagctccaaagaatgtg
ctcaccaggatgccgttgcacgagggcagtcctttaggagaactgaaccgctgcgtccag
cagcgactccgagttaaagtccacatccggtcgtttaagggtctgcgcggagtgtgtacc
ggcttcctagtggctttcgacaaattctggaacttggccatggtggatgtggatgaaact
tacagggagcctttacttggagaggcattctaccatgaaaaagcactgactgttacaagg
ctgtttcagaagttgcaagttcaggctgcatccgggaaagcagcagaggctgagacttca
aaagcagacgagccaagtgctgaaccacacgtcaccacaagcagcatgctgggggttcga
gcatcccgacaagcagcggagagactggcgcgatccgtgaacgtgctggcagtgactagc
acagacgtgcctcatatatctgctgctggttcagagcagagacagaagatgtctaagcca
agagtggagtacggacgagtgcgtactcgtcacgtcaatcagctttttatccgcggagaa
aacgttctccttgtgaatattcagcaagagtag
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