Ictalurus punctatus (channel catfish): 108268933
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Entry
108268933 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04120
Ubiquitin mediated proteolysis
ipu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108268933
04120 Ubiquitin mediated proteolysis
108268933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108268933
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108268933
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108268933
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf_RING_Vps8_fungal
zf-RING-like
FAR1_N
zf-RING_Vps41
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
108268933
NCBI-ProteinID:
XP_017329791
Ensembl:
ENSIPUG00000000845
UniProt:
A0A2D0RI25
LinkDB
All DBs
Position
8:14237964..14251535
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AA seq
613 aa
AA seq
DB search
MVRAALVTATSLALTGAVVAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMVLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYILHTIDLQSENPWENKAVYMLYTELFTGFFKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRATQPNTTPAPAAPAPPAAPAAPANG
PAPPAANVAPGVMPQFPPGLFPFWAPFPGAVPPAAPPAAPQAASSTTQTSADATQTSGAE
SGASSSSQTGTDGGVAAPVAGVPGFPFSMPPPFPSAPWLPMPPPPPFMSSMPPPPPSLSA
MSEEELRELEQEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLTTVATLSPPRAESRTGEV
SGSGKTEASSQENGTPISPVSGATGFSQPDSTTGVEREEKKEEEEAEVDGEPSAAELRRR
RLRKLDTTPPLDH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagcagctttggtaacagctactagtctggccctgaccggtgctgtcgtggct
catgcctacttcctcaaacaccagttctatcctacagtggtatacctcaccaaaagcagt
ccgagcatggcagttttatatatccaggctttcgtgttggtttttctgctgggaaagttc
atgcgcaaggtcttctttggccagctgagagctgcagagatggagcacctgatcgagcgt
tcctggtatgccgtgactgagacctgcttagcctttacagtcttcagggatgacttttcc
ccccgttttgtggcccttttcactttgctgctcttcctcaagtgcttccattggctggct
gaagacagagtcgactttatggaaagaagtccgaacatatcgtgggtcttccacttccga
gttctctctctaatggtgttgctaggagtactagacttcttattcgtcaatcatgcctgc
cacagcatcatcaccagaggagcctcggtacagctggtcttcggatttgagtacgcgata
ctgatgaccatggttctcaccaccttcatcaaatatatcctgcacaccattgacctccag
agcgagaacccgtgggaaaataaagctgtctacatgctttacacagagctctttacaggc
ttttttaaggtgttgctgtacatggcgttcatgaccataatgatcaaagtgcacaccttc
cccctgtttgccattcgacccatgtatctcgcgatgaggcaatttaagaaggctgtaacg
gatgccataatgtctcgacgagccattcgcaacatgaacacactctacccagatgcaact
cctgaggacttgcaagcctctgacaatgtgtgtatcatctgtcgagaagagatggtaacc
ggagccaagaaactgccctgcaaccacatctttcactcaagttgccttcggtcgtggttc
cagaggcagcagacatgtccaacatgccgtatggatgttctgcgggcgacgcagcctaac
actactcctgctcccgctgcgccagcaccgcctgcagcacctgcagctccagctaatggt
cctgctcccccagctgctaatgttgctccaggtgtgatgccccaattccccccaggcctt
ttccctttttgggctcctttccctggtgcagttcctcctgctgctccccctgctgctccc
caggctgcctccagcaccacacagacgagtgcagatgcaacccaaacttcaggtgcagaa
tcaggggcaagtagctcaagccagactggaacagatggtggtgttgcagctcctgtggct
ggagtgcctggattccccttctccatgcccccaccattcccatcagcaccatggctgccc
atgcctcctcctccacccttcatgtcctccatgcctcctcctccaccgtctctgtccgca
atgtctgaggaagaactgagggagttggagcaggaaggccgccgtggtctggaggcaaga
ctgcagtgcctccagaacatccacacactgctggatgccgccatgcttaacatccaccac
tatctcaccaccgttgctacactcagtcctcctcgagcagagagccgcaccggtgaagtg
agtggatcaggcaaaactgaagcttccagccaagagaatggaacaccaatcagtcctgtc
agtggtgcgacaggtttttcccaaccagactcaaccacaggagtcgagagggaggagaag
aaggaggaagaggaggcagaggtggacggggagccgagtgctgctgaattgagacgtcgg
cgcctacgcaagctcgacaccacaccgcctctggaccactga
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