Ictalurus punctatus (channel catfish): 108268967
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Entry
108268967 CDS
T04658
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108268967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108268967
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108268967
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108268967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
108268967
NCBI-ProteinID:
XP_017329879
Ensembl:
ENSIPUG00000013174
UniProt:
A0A2D0RH70
LinkDB
All DBs
Position
8:complement(1924899..1940450)
Genome browser
AA seq
1696 aa
AA seq
DB search
MIFSKETPWRRLDGMSFSMYSSEEIRKLSVKGVTNPLLLDNVGNPAPNGLYDLSLGPADL
KEICTTCMQDFNNCPGHFGHVDLHLPVYNPFLFDKLYMLVRGSCLSCHMLTCTRAVIHLL
LNQLKLLDVGLMKEVCDVAVVLNQFLEGSPQASGAEIQEALEEFSAPILKANRSSHGCAP
IKHVCEMRNSLVTEFWRSHMVSRKCPNCNARKSQVRREHNSKLIVTHPSVKLDREADEDD
AHVTKRGYLTPSLARDHVTKVWEKEGFFLKHLLSGLAENSPNGFSPDMFFLDLLMVPPSR
YRPISRLGDQMFTNGQTVNIQAVIKDNMIIQKLLALIAAEKARAIEGTQTELEEPTETED
PSQMDQAFLAGLTGVTLTDKLYNAWIRLQSHVNIVFDSEMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGTRTILSRTNPTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHRTRILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRDCFFQQDQYMELVYRGLTDKRGR
IKLLPPALIKPRKLWTGKQVVSTLLLNVIPENHIPLNLKGKAKIPSKAWVKESPRSWPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKQRKKIIKESVNCGIKALRAAFNLPAAAAENEGRDLWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPALMPSGKSLPCFQPYEPQPHSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDVP
KTQFLQPRQFPFIKDNFEVIRKAQCLDEVLAKLDPQAAHSHSKAVKKWKAKHELSSPRNG
AFLLFSQKKLGKLKAQAEGQLGELINGRDNASLQVMESWKTMEESRRVKYLKKTTHCPDP
CLAMYRPDICFGSVSETFESIIESYLSQFNIRQEFHPSSEYVDSERLRHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMMS
IPVRSGKKALKRVKILQKKLTRVCLAEVLHKVDVVETLRIEGKRGQKKRIFTVMFHFLPP
ELYQQDKSLQPQQILRFMEDRFFLLLLDAIKKLSAKLASINSVDTRKATGKDTDRDAEGS
TNRADDEAEGAEDGRVVDDEADEGDADAADAKRKEKQEEEVDYESEDGENSGEEDQEEVT
GQPEENVGSEELAEARNDNSQPSVQENADGDTLDSMRVSKVLQFSPMIEAYRYDQQKDLW
CEITLVLPVSKVHFDLTSLVVAQAQNAVVMETKGITRCLLNEVTTKQGAKEQVLITEGIN
MQEMFKHGDVLDLNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKQAAILGLHDKLNSPSACMVVGK
VVKGGTGLFDLKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgattttttctaaggagacgccatggagacggttggacggcatgtcattcagcatgtac
tcctctgaggagataaggaaattgagtgtcaaaggtgtcactaatcctctgctcctggat
aatgtcggtaacccggctcctaatggactctatgatctgtcactgggtccagctgacctt
aaagaaatctgcacaacctgcatgcaggacttcaacaactgcccgggacacttcggccat
gtcgacttgcacctacccgtctacaaccctttcttattcgataaattgtacatgctcgta
cgaggttcctgtctgtcgtgccacatgttgacgtgtaccagggctgtcattcacctgctt
ctcaaccaactcaaattgttagatgtaggactgatgaaggaagtctgcgatgtggcggtc
gtccttaatcagtttttagaaggtagtccacaagcatcgggggcagaaatccaagaagct
ttggaggaatttagcgctcctattctcaaagccaaccgaagcagccacggctgtgcacct
atcaagcatgtttgtgagatgaggaacagcctcgtcactgaattttggagatctcacatg
gtgtctagaaaatgccccaactgcaatgccagaaagtcacaggtacgtcgagagcacaac
agcaaactaatcgtcactcatccgagcgtcaaactcgaccgtgaagcggacgaagatgac
gctcacgtgactaaacgtggatacctgactccgagcttggcccgagatcacgtcaccaaa
gtgtgggagaaagagggtttcttcctgaagcacttgctctcaggcctggcggagaacagt
cctaacggtttcagcccggatatgttcttcttagatttgctaatggttcctccatccagg
taccggcctatcagtcggctgggagatcagatgtttaccaacggtcagacagtgaacata
caggcggtgatcaaggacaacatgatcattcagaaactgcttgccttgatcgcagctgag
aaagccagggcgatagagggtactcagaccgaactggaggagcccactgagacagaagat
cccagccagatggaccaggcgtttttagccgggctaactggagtcacccttacagacaaa
ctctataacgcctggattcgcctgcagagtcacgtcaacattgtgttcgacagcgaaatg
gacaagctgatgaccgagaagttccctggaatccgccagctcttggagaagaaggagggt
ctgttcaggaagcacatgatgggaaagcgagtggactttgctgctcgctctgtcatctgt
ccagacatgtacatcggaaccaacgagatcggaatacccatggtgtttgccactaagctg
acgtacccacagccggtgacgccgtggaacgtgaaggagctgcgtcaggccgtgcttaac
gggcctgatgtgcacccaggagcctctatggtcatcaacgaggatgggacgcgcaccatt
ctcagccgtaccaaccccacccagagagaggctatcgctaagcaactgcttacacccagc
acaggccagcaccgcatgcccatgaagatcgttaatcggcacatcaaaaatggagacgtg
ctccttctgaatcgtcagccgacgctacacagaccatctatccaggctcatcgcactcgc
atcctgcctggagagaaggtgctacggctgcattacgccaattgcaaggcctacaacgct
gactttgatggcgacgagatgaacgcgcacttcccgcagagtgagctgggtcgggctgag
gcctacacgctcgtcagcacagaccagcagtacctggtgcccaaggatgggaagcccctg
gccggactaatccaggaccacatggtgtcgggcaccagcatgaccatccgtgactgcttc
ttccagcaagatcagtacatggagctggtctatagaggtctcaccgataaaagaggcaga
atcaagctgcttcctcctgctctcatcaaaccgcgaaaactttggactggcaaacaggtc
gtgtcaaccctcttgttgaacgtcattcctgagaaccacatccctctgaacctgaaagga
aaggccaagattcccagtaaggcctgggtgaaggagtctcctcgatcctggccaggttac
catccagactccatgtgtgactctcaggtggtgattcgtaatggcgagctgctagtcggc
gtgctggataaagcacactatgggagctctgcgtacggcctggtgcactgctgctatgag
ctgtacggaggagagaccagtggcaagcttctaagctgcctggcccggctttttaccgcc
tacctgcagctctatcgtggctttaccatgggtgtggaagacattttggtaaaaccagga
gccaacaagcagagaaagaagatcatcaaagaatcagttaattgtggcatcaaggcactc
agggcagcctttaacctgcctgctgctgctgcagaaaacgaaggccgggacctgtggcaa
aacgcccatctgaacatagaccagcgagacttcaacatggtggacctcaaattcaaagaa
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccattgggcctgcaccgt
tcatttcctgagaacaaccttcagctcatggtgcagtctggagccaaaggatccaccgtc
aatacaatgcagatctcatgtctgctgggccagatagagctcgagggccgtcgtcctgca
ctgatgccttctgggaaatccctgccttgtttccagccttatgagccacaacctcattct
ggtggctttgtaaccgggaggttcctgactgggataaaacctccagagttttttttccac
tgtatggctggtcgtgaaggcctggtggacacagcggttaaaacgagtcgttccggctat
cttcaaaggtgtgtgataaagcacctcgagggtctggtggtccagtacgacctgacggtg
agggacagtgacggcagcgtggtgcagttcctctacggagaggacggcctggacgttccc
aaaactcaattcctgcagccccgtcagttccctttcatcaaggacaacttcgaggtaatc
aggaaagcacagtgcttggatgaagtgctggcaaaactggacccacaggcggctcatagt
cactcaaaggccgttaagaagtggaaggctaagcacgagctttcgtctcccagaaacggc
gccttcctgctcttctctcagaagaaactgggcaagcttaaggctcaggctgaaggccag
ctgggagagttaatcaacgggagagacaatgcttctctgcaagtgatggagagttggaaa
actatggaggaatccagacgtgtcaagtatctgaagaagaccacccactgcccagatcca
tgcctagctatgtaccggcctgacatctgtttcggttccgtctccgagacgttcgaatcc
atcatcgagtcctacctcagtcagttcaacatccggcaggaatttcacccttcgtctgaa
tacgttgacagtgagagattacggcacctgttgcatctgaagtggcagagagcgttgtgt
gagccgggagaggctgtaggactgctggctgctcagagtatcggtgaaccctcgactcag
atgaccctcaacacctttcactttgcgggcagaggagagatgaacgtcactctgggtatt
cccaggttgcgtgaaattctgatgattgctagttccaacatcaagacgcccatgatgagc
attcctgttcgaagcggcaagaaagctttaaaacgagtgaagatcctgcagaagaagctc
acacgtgtgtgtctggcagaggtgttgcacaaggtggacgtggtggagacgcttcggata
gagggtaaaagaggccagaaaaaacgaatcttcacggtcatgttccacttccttcctccg
gagctttaccagcaggataagtcgctgcagccccagcagatcctccgcttcatggaagac
agattcttcttattacttcttgacgccatcaagaaactgagtgccaagctggcctctata
aattcagtggacacgcgcaaggccacaggaaaggacacagatcgagatgcggagggctcc
actaaccgagcagatgacgaagccgagggagcagaggacggcagagtggtggacgacgag
gcggacgaaggggacgcggacgccgctgacgccaagaggaaggagaagcaagaggaggag
gtagactacgagagtgaggacggggagaacagcggggaggaagaccaagaagaggtgacc
gggcagccagaggagaacgtgggatcagaagaactagctgaggcgaggaatgacaacagt
caaccctccgtccaagagaatgcggacggagacaccctggactcgatgagagtcagtaaa
gttctgcagttcagccccatgattgaggcctacagatacgaccagcaaaaagacctgtgg
tgtgagatcaccctggtgctcccagttagcaaagtgcactttgacctgacctctctggtg
gtagcacaagctcagaacgctgtagtcatggaaacgaaaggtatcacacgttgtttactc
aacgaggtgaccaccaagcagggtgccaaggagcaggtcctgatcaccgagggcatcaac
atgcaggagatgttcaagcacggagatgttctcgacctgaatcgtttatattccaatgag
gtccatgccatggccaacacgtacggtattgaagtggctctgagggtcatcgagaaggag
attaaagacgtgtttgctgtttacggtatcgaagtggacccgcggcatctctctctagtg
gctgattacatgtgctttgaaggcgtgtacaaaccgctcaaccgcttcggcattcagtcc
aacagctccccgctgcaacagatgacctttgagaccagctataagtttttgaaacaagcc
gctattttaggcttgcatgataagttgaattcaccctcagcttgcatggttgtgggaaaa
gttgtgaaaggaggaactggactctttgacctgaagcagcccttacagtga
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integrated database retrieval system
