Ictalurus punctatus (channel catfish): 108269011
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Entry
108269011 CDS
T04658
Name
(RefSeq) cullin-4B isoform X1
KO
K10609
cullin 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108269011
09124 Replication and repair
03420 Nucleotide excision repair
108269011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108269011
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108269011
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108269011
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
108269011
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108269011
TCR (transcription coupled repair) factors
Cul4-CSA complex
108269011
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108269011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
Motif
Other DBs
NCBI-GeneID:
108269011
NCBI-ProteinID:
XP_017329973
Ensembl:
ENSIPUG00000019091
UniProt:
W5UIM1
LinkDB
All DBs
Position
8:complement(7690464..7704398)
Genome browser
AA seq
854 aa
AA seq
DB search
MFPTGLPSPNPPAPSQEARAAASDVNSDSSLTPCRKRRIHSSDREDTDSVSASPKSPKAA
CNSSASCSSSSSQHIQKKLRFEERSECTGLDVKMAEESPTASCSKAKSAFFSGHANGLTK
SVGSATFANSKPGAAKKLVIKNFKEKPKLPENYTRETWQKLKEAVEAIQNSTSIKYNLEE
LYQAVENLCSHKISAKLYKQLRVVCEDHIKAQIDEFREDSLDSVLFLKKIDKCWQDHCRQ
MIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDWKVQSKTIDGILLLIERERN
GEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHVNK
RLEEEADRVITYLDQSTQKPLVATVEKQLLGEHLTATLQKGLNHLLDENRIQDLSLLYQL
FSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDSIIDICFMKNEK
FVNAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYG
KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIM
VQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVKLQEIFKTFYLGKHSGR
KLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKLATGIEDSELR
RTLQSLACGKARVLTKTPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQASTT
ERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYM
ERDKENSNQYNYVA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaacaggtttaccttcccctaatcccccagcgccaagccaagaggccagagcg
gcagcttcggatgtgaacagcgacagcagtctcacaccttgtaggaagaggaggattcac
agctcggacagggaggacactgactccgtctctgcgtctcccaaatcccccaaagccgcg
tgcaattcctctgcgtcctgctcttcctcctcgtcgcagcacatccagaagaaattgcgg
ttcgaggagcgctcggagtgcacaggactggatgtgaagatggcagaggagtctcccacc
gcatcgtgctccaaggctaaaagcgcgtttttctccggtcacgctaacggactcaccaaa
tccgtcggatcggcgacattcgccaacagcaaacccggagctgctaagaaacttgtgatc
aaaaactttaaggaaaagccaaaattgccagaaaactacacacgtgagacatggcagaag
ttgaaggaagcagtggaggccatacagaatagcacgtcaataaagtacaatctggaggag
ctttatcaggctgttgagaatttgtgctcccataagatatctgccaagctgtataagcag
ctaagagtggtatgcgaagaccacatcaaggcacaaatcgatgagtttcgagaggactct
ctggacagtgtgcttttcttgaagaaaatagacaaatgttggcaagaccactgcagacag
atgatcatgattaggagtatatttttgtttttggaccgcacatatgttttacaaaattca
atgctgccatcaatctgggatatgggactggagttgtttcgtttctacatcatcagtgat
tggaaagtacaaagcaagacaattgatgggatcctgctcctcatagagagagaacgcaat
ggggaggctatagaccgctctcttctgaggagtctactgagcatgctctctgacctacaa
atttatcaagattcctttgagcaacgctttctggaggagacaaatcggctgtatgctgca
gaaggtcagaggctgatgcaggaaagagaggtgcctgaatatctccatcatgtaaacaaa
cgtttggaggaggaagcagacagggtcatcacatacttggaccagagcacacaaaaaccc
ctcgtagccactgtggagaagcagttacttggtgaacatctgaccgcaacacttcagaaa
gggttgaatcatctgctggatgagaaccgtatccaggacttgtctttgctatatcagctg
ttcagtcgagttcgaggtggagtgcaggtccttctgcagcactggattgagtatatcaag
gcctttggtagcacaatagttatcaatcctgagaaagacaagacaatggtgcaggaactg
ctggacttcaaggataaagtggattccattatcgatatatgcttcatgaagaatgaaaaa
tttgtaaatgccatgaaggaagcttttgagaccttcatcaacaagcggccgaacaaacct
gcagagctcatagcaaaatatgtggattcaaaactgcgggcaggaaataaggaagccaca
gatgaagaactcgagaagatgctggacaagattatgatcatattcagatttatttatggc
aaagatgtatttgaggccttctacaaaaaagacctagcaaagaggttgctggtcggaaaa
agtgcctctgttgatgctgagaagtcaatgctctcaaaactgaaacatgaatgtggagca
gcttttaccagtaaattggaaggaatgttcaaagacatggagctctcgaaagatatcatg
gtgcaattcaaacagtacatgcaatgccaaaatatcccaggtaacattgagctgaccgtg
aacattctcactatgggttattggccaacgtatgtccccatggaagttcatctgcctgca
gagatggtgaagctacaagaaattttcaagaccttttatcttgggaagcacagcggaaga
aaactacagtggcagtcgacattaggacattgtgtattaaaagctgaattcaaagagggg
aagaaagagcttcaggtgtcactgtttcagacattagttctgctgatgtttaatgaagga
gaagaattttccttggaagagatcaaactggcaacaggaatagaggacagtgagctgagg
cggaccctccaatccctggcttgtggcaaggcaagagtacttaccaaaaccccaaaaagc
aaagatgtggaagatggagacaagttttcctgcaatgacgatttcaagcacaagctcttc
aggattaagatcaaccagatccagatgaaagaaacggtggaggagcaagctagtactaca
gagcgagttttccaggaccggcaataccagattgatgctgccattgtccgcattatgaag
atgaggaagactttgagccataatctcctagtgtctgaggtttacaaccaactcaagttc
cctgtaaagcctgctgatttaaagaagaggatagagtcgctcattgatagagactacatg
gaaagagacaaggagaactccaatcagtacaactatgtggcttag
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