Ictalurus punctatus (channel catfish): 108269158
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Entry
108269158 CDS
T04658
Symbol
cnot7
Name
(RefSeq) CCR4-NOT transcription complex subunit 7 isoform X1
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108269158 (cnot7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108269158 (cnot7)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108269158 (cnot7)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108269158 (cnot7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
108269158
NCBI-ProteinID:
XP_017330261
Ensembl:
ENSIPUG00000021369
UniProt:
W5UJF3
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All DBs
Position
8:10850624..10862254
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AA seq
286 aa
AA seq
DB search
MPAATVDYSQKICEVWASNLDEELKRIRQVIRKYNYIAMDTEFPGVVARPIGEFRSNADY
QYQLLRCNVDLLKIIQLGLTFMNELGEYPPGTSTWQFNFRFNLTEDMYAQDSIELLTTSG
LQFKKHEEEGIETLYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPEEEVD
FFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLDLERIGPQHQAGSDSLLTGMAFFK
MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQQS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagccactgtggattatagccaaaaaatatgtgaggtgtgggctagtaacctg
gatgaagagctgaaaaggattcggcaggtgatccgaaaatacaactacatcgcgatggac
acagagtttccgggtgtggttgctagaccgatcggagagttcagaagtaatgcagactac
cagtatcagctcctacggtgtaatgttgatttgttgaagattatccagcttggccttacc
ttcatgaatgaactgggtgaatatccaccaggaacttcaacatggcagttcaacttcaga
tttaacctcacggaagatatgtatgcacaggattcaattgagctactgactacatcaggt
ctccaattcaaaaagcatgaagaagaaggcattgagacactgtattttgcagagctcctc
atgacttcaggtgtggtgctctgtgaaggggtcaagtggctgtcgttccatagtggctat
gactttggatacttgatcaaaatcttgtccaactcaaagctgccagaggaagaagttgac
ttctttgagattcttcgtttatttttccccattatctatgatgtgaaatacctcatgaag
agctgtaaaaacctgaagggtggcctgcaggaggtagctgagcagctggatctggagagg
attgggcctcagcatcaggcaggctcagactctctcctcacaggaatggcattctttaag
atgagagagatgttttttgaggatcatatcgatgatgcaaagtactgtggtcatttgtat
ggactgggctctggttcatcctacgtccagaacggcaccggcaacgcctatgaagaggaa
gccaacaagcagcagtcatga
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