Ictalurus punctatus (channel catfish): 108269223
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Entry
108269223 CDS
T04658
Name
(RefSeq) synaptic functional regulator FMR1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108269223
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108269223
Factors involved in mRNA localization
Other mRNA localization factors
108269223
mRNA cycle factors
Stress granule specific factors
108269223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXMR_C2
KH_9
Tudor_FRX1
KH_1
Agenet
DCD
Motif
Other DBs
NCBI-GeneID:
108269223
NCBI-ProteinID:
XP_017330436
Ensembl:
ENSIPUG00000014418
UniProt:
W5UBC9
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All DBs
Position
8:24218640..24229507
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AA seq
570 aa
AA seq
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MEELAVEVRGASGAFYKAFVKDVHENTVTVTFENNWQPERQIPFHDVRFPPPAGVQKEIT
ESDEVEVYSRANDKEPCGWWQAKVRMVKGEFYVIEYAACDATLNEIVTLERLRPVNPNKA
TAKNPFLKIRLDVPEDLRQICAKDSAHKDFKKAVGAFNVTYDSDKKQLVILSVNEVTTKR
ATMLTDMHFRSLRTKMSLILRNEEASRQLESSRQLASRFHEQFVVRDDLMGLAIGTHGAN
IQQARKVPGVTNIDLDEETCTFHIYGEDQEAVRKARSYLEFSEDVIRVPRNLVGKVIGKS
GKLIQEVVDKSGVVRVRVEPENEKKSSPLEEGMVPFVFVGTKESISNARLLLDYHLNYLK
EVDQLRMERLQIDEQLRQIGGGPRAPSGRPEKEKPFSSDNGMGHSRGGKPFGRGGRGRRG
PTFASGTNSEASNASETESDHRDELSDWSLAPTDEESMGYPKRVPDGRKRGSGGGRGRGG
RGRGGGYKGEDVHWSESRPRNSRDSKPRLQEDSLQIRVDSNNERSVHTSRGPQGPISDSG
GPRQRSVKERGIKKDKPEGPDSQVVMNGVS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctggcggtggaagtgaggggcgcgagcggggctttctacaaggctttcgtg
aaggacgtgcatgagaacaccgtcactgtgacgtttgaaaacaattggcagccagagcga
cagatcccttttcatgatgtgcggttccctcctcctgctggggttcagaaagagatcact
gagagtgatgaggttgaggtgtactccagggctaatgacaaggaaccatgtgggtggtgg
caagccaaagtgcgcatggtaaaaggggagttttatgtcatcgagtacgccgcctgcgat
gccacgctcaacgagatcgtcacgttagagaggctgcggcctgtgaacccgaacaaagcc
accgcgaagaaccccttcctgaaaatccgactggacgttccagaagacctgcgacagatc
tgcgcaaaagactccgctcacaaagatttcaaaaaagccgtcggagcgtttaacgtcacg
tatgactctgataagaagcagctggtcattctgtcagtcaacgaggtgactactaaacgg
gcgaccatgttgacagacatgcacttcaggagcctgcgcaccaaaatgtccctcattcta
cggaacgaagaggccagtaggcagctggagagctctcgtcagttagcgtcacggttccac
gagcagttcgtggtgcgcgacgatctgatgggtttggccatcggcacacacggagccaac
atccaacaggcccgcaaagttcccggagtcactaacatcgacctagacgaggagacgtgc
acctttcacatatatggagaggaccaggaggctgtgcgcaaagccaggagctatctggag
ttttccgaagatgttatcagggtacccaggaatttagtaggaaaagtcattgggaagagc
gggaagctgattcaggaggtcgtggacaaatccggagtcgtccgagtgagagtggaacca
gaaaacgagaagaaatcatctccgttggaggagggcatggtgccgttcgtgtttgtcggg
acaaaagaaagcatctcaaacgcacgcctactgctcgactaccatctcaattatctcaag
gaggtggatcagttgcgaatggagaggctgcagattgatgagcagctacgacagatcggc
ggaggccccagagctccatcaggccgaccggagaaggaaaaaccattcagctctgataac
ggcatggggcattcccgagggggcaagccgttcggccgtggggggcgaggaagacgaggg
cctacgtttgcgtcaggcaccaattctgaagcatcgaacgcatccgagactgaatcagac
cacagagatgagctgagtgactggtctctggctcccaccgatgaagagtctatgggttac
cccaaacgagtcccggacggacgaaagaggggcagcggtggcggccggggacgaggggga
cgaggaagaggaggaggttacaaaggtgaggacgtacactggagtgagtcacgcccccgg
aactccagagattccaagccaaggctgcaggaggattcactacagattcgtgtcgacagc
aataacgagaggagtgtccacaccagccgaggccctcaggggcccatcagcgactccggc
ggcccccgacagaggagcgtcaaggagcgagggataaagaaagacaagccggaagggcca
gacagccaggtcgtcatgaacggcgtgtcgtaa
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