Ictalurus punctatus (channel catfish): 108269245
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Entry
108269245 CDS
T04658
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108269245 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108269245 (ddx61)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108269245 (ddx61)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108269245 (ddx61)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108269245 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
108269245 (ddx61)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108269245 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
108269245
NCBI-ProteinID:
XP_017330489
Ensembl:
ENSIPUG00000012823
UniProt:
W5ULV7
LinkDB
All DBs
Position
1:19542840..19556055
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AA seq
478 aa
AA seq
DB search
MATARTQIPTSVMGVTKQNGQARSADLQSGSQPATVFSASQKGSSIPHTTGGIRFGDDWK
KSLQLPQKDLRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG
RDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICINMSRHMGG
VKVMATTGGTNLKDDIMRLDETVHVVIATPGRLLDLMKKGVAKADKVHMMVMDEADKLLS
QDFVILIEDIIGFLDKNRQILLYSATFPITVQKFMSKYQRKPYEINLMDELTLKGITQYY
AYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYR
NRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRYGHLGL
AINLITSDDRFNLKTIEDQLVTDIKPIPGSIDKSLYVAEFHSINHEEEEEKEDALGAP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaagaacacagatccccacctcggtcatgggagtcaccaagcagaatggg
caggcaaggtcagcggacctccagtcgggatcacaaccagcaacagtgttcagtgcctcc
cagaaaggaagcagtataccacacaccactggtggcatcagatttggagatgactggaag
aagtccctgcaactcccacaaaaagatttgagagtgaaaacctcagatgtgaccgcaacc
aagggcaatgagtttgaagactattgccttaaacgtgaattgttaatgggcatcttcgaa
atgggttgggagaagccatctcctattcaggaggagagcattcctattgccctatcagga
agggacattctagcccgggccaaaaatggcacagggaagagcggagcctacctcatccct
ctcctggagaggattgacctaaaaaaggatcatattcaagccatagtaatggtgccaact
cgagaattggctctgcaggtgagccaaatctgtatcaacatgagcaggcacatgggggga
gtgaaggtcatggccaccactggtggaaccaatctaaaagatgacatcatgcgcctagat
gagacagtgcatgtggtgatagccacaccaggcaggctgctggaccttatgaagaaaggt
gtggccaaagctgacaaagtccacatgatggtgatggatgaggcagacaagttgctctct
caagactttgtcatccttattgaggatataattggatttttggacaagaatcgtcagatt
ttgctttattctgccaccttccccatcactgtacaaaaattcatgtcaaaataccaaaga
aagccctacgagataaacctgatggatgagctgactctgaagggcatcactcagtactat
gcatatgtaactgagagacagaaagtgcactgcctcaacacgcttttctccaggctccag
atcaaccagtctataatcttctgtaactcaactcagagggtggagcttttggctaagaag
atcacacagttgggctactcttgtttttacatccatgcaaaaatgatgcaggaatacaga
aatcgtgtgttccatgacttcagaaatggtctgtgtagaaacctggtttgcacagatctt
ttcacaagaggaattgacattcaggctgtcaatgtggtcatcaactttgactttcccaga
aatgcagaaacctacctacaccgcattggtagatcaggcaggtatgggcacctgggtctg
gccattaatctgatcacttcggatgatcgtttcaatctgaagactattgaggaccagcta
gtgactgacattaagccaattcccggcagcattgataagagcctgtatgtggcagagttc
cactccatcaatcacgaggaagaggaagagaaggaggatgcactcggtgcaccgtaa
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